Table 1 Candidate regions of selection in Nigerian cattle identified by both PBS and CLR approaches in the 1% windows analysis using UMD3.1 and ARS-UCD1.2 bovine reference genome assemblies

UMD3.1

1

24.55—24.56

0.5074

71.79—130.27

11.0443—35.1499

ROBO2, IL12A, DLG1, PIK3CB

ARS-UCD1.2

1

24.55—134.97

0.7934—0.8605

71.79—130.27

11.0443—35.1499

AMOTL2, FILIP1L, LOC101906248, GBE1, ROBO2, IL12A, DLG1, PIK3CB

UMD3.1

2

-

-

112.21

23.6732

SERPINE2

ARS-UCD1.2

2

-

-

112.21

23.6732

SERPINE2

UMD3.1

3

-

-

26.85

24.1543

ATP1A1

ARS-UCD1.2

3

-

-

26.85

24.1543

ATP1A1

UMD3.1

5

18.34

0.5601

-

-

KITLG

ARS-UCD1.2

5

18.34

0.5601

-

-

KITLG

UMD3.1

6

70.22—70.31

0.356—0.5339

-

-

KIT, LOC112447081

ARS-UCD1.2

6

5.61—109.69

0.5801—0.6146

-

-

KIT, LOC112447081, RAB28, LOC112447028, LOC112447126, LOC112447030, LOC112447169, LOC112447029, GABRG1, LOC112447030

UMD3.1

7

21.7

0.4454

-

-

IL4

ARS-UCD1.2

7

-

-

-

-

-

UMD3.1

11

-

-

49.08

30.2696

ATOH8

ARS-UCD1.2

11

-

-

49.08

30.2696

ATOH8

UMD3.1

22

11.6—11.61

0.5781

-

-

ACAA1, MYD88

ARS-UCD1.2

22

-

-

-

-

-

UMD3.1

23

7.1—51.82

0.3904—0.4787

-

-

BOLA-DYB, BOLA-DOA

ARS-UCD1.2

23

7.11

0.5991

-

-

BOLA-DYB