Leveraging transcriptome and epigenome landscapes to infer regulatory networks during the onset of sexual maturation

Mohamed, Amin R.; Naval-Sanchez, Marina; Menzies, Moira; Evans, Bradley; King, Harry; Reverter, Antonio; Kijas, James W.

doi:10.1186/s12864-022-08514-8

Table 1 Top 20 differentially connected genes (DCGs) associated with onset of sexual maturation in Atlantic salmon. Gene annotation, tissue of maximum expression, the omic category and differential connectivity data between pre- and post-maturation are shown

From: Leveraging transcriptome and epigenome landscapes to infer regulatory networks during the onset of sexual maturation

GeneID	Number of connections		Differential connectivity	Annotation	Contribution	Tissue of maximum expression	Omic category
GeneID	Pre-	Post-	Post vs Pre	Annotation	Contribution	Tissue of maximum expression	Omic category
106,574,348	10	599	589	E3 ubiquitin/ISG15 ligase TRIM25-like	28.57	pit	DE, DMG
106,590,493	114	657	543	uncharacterized protein LOC106590493, partial	28.57	ov	DE, DMG
106,566,126	90	609	519	R3H domain-containing protein 2-like	28.57	ov	DE, DAC
106,573,705	58	576	518	zinc finger protein 423	42.86	pit	DE, TF, DAC
106,589,399	43	551	508	protocadherin-15-like	14.29	pit	DMG
106,562,515	4	508	504	RILP-like protein 1	28.57	liv	DE, DMG
106,562,229	30	533	503	tumor necrosis factor receptor type 1-associated DEATH domain protein-like	28.57	ov	DMG, DAC
106,612,386	41	535	494	zinc transporter protein DDB_G0282067	28.57	ov	DE, DMG
106,568,904	37	525	488	putative ferric-chelate reductase 1	14.29	ov	DE
106,568,722	10	489	479	cAMP-specific 3\’,5\’-cyclic phosphodiesterase 4B-like	14.29	pit	DMG
106,606,431	487	32	− 455	metalloproteinase inhibitor 2-like	14.29	pit	DE
100,195,217	543	87	− 456	protein phosphatase 1H	28.57	liv	DE, DAC
106,613,686	560	104	−456	Krueppel-like factor 2	28.57	liv	DE, DAC
100,195,880	474	11	− 463	Ependymin-1 precursor	14.29	pit	DE
100,195,838	488	18	− 470	ependymin-2 precursor	28.57	ov	DE, DMP
106,588,682	594	113	− 481	zona pellucida sperm-binding protein 3-like	14.29	pit	DE
106,610,009	546	46	−500	guanylate cyclase soluble subunit beta-1	28.57	liv	DMP, DMG
100,194,692	513	9	−504	Krueppel-like factor 11	28.57	liv	DE, TF
100,196,465	560	31	− 529	glyoxalase domain-containing protein 5	14.29	ov	DE
106,586,502	559	7	− 552	serine/arginine repetitive matrix protein 2-like	42.86	ov	DE, DMG, DAC

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ISSN: 1471-2164

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