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Table 1 Top 20 differentially connected genes (DCGs) associated with onset of sexual maturation in Atlantic salmon. Gene annotation, tissue of maximum expression, the omic category and differential connectivity data between pre- and post-maturation are shown

From: Leveraging transcriptome and epigenome landscapes to infer regulatory networks during the onset of sexual maturation

GeneID Number of connections Differential connectivity Annotation Contribution Tissue of maximum expression Omic category
Pre- Post- Post vs Pre
106,574,348 10 599 589 E3 ubiquitin/ISG15 ligase TRIM25-like 28.57 pit DE, DMG
106,590,493 114 657 543 uncharacterized protein LOC106590493, partial 28.57 ov DE, DMG
106,566,126 90 609 519 R3H domain-containing protein 2-like 28.57 ov DE, DAC
106,573,705 58 576 518 zinc finger protein 423 42.86 pit DE, TF, DAC
106,589,399 43 551 508 protocadherin-15-like 14.29 pit DMG
106,562,515 4 508 504 RILP-like protein 1 28.57 liv DE, DMG
106,562,229 30 533 503 tumor necrosis factor receptor type 1-associated DEATH domain protein-like 28.57 ov DMG, DAC
106,612,386 41 535 494 zinc transporter protein DDB_G0282067 28.57 ov DE, DMG
106,568,904 37 525 488 putative ferric-chelate reductase 1 14.29 ov DE
106,568,722 10 489 479 cAMP-specific 3\’,5\’-cyclic phosphodiesterase 4B-like 14.29 pit DMG
106,606,431 487 32 − 455 metalloproteinase inhibitor 2-like 14.29 pit DE
100,195,217 543 87 − 456 protein phosphatase 1H 28.57 liv DE, DAC
106,613,686 560 104 −456 Krueppel-like factor 2 28.57 liv DE, DAC
100,195,880 474 11 − 463 Ependymin-1 precursor 14.29 pit DE
100,195,838 488 18 − 470 ependymin-2 precursor 28.57 ov DE, DMP
106,588,682 594 113 − 481 zona pellucida sperm-binding protein 3-like 14.29 pit DE
106,610,009 546 46 −500 guanylate cyclase soluble subunit beta-1 28.57 liv DMP, DMG
100,194,692 513 9 −504 Krueppel-like factor 11 28.57 liv DE, TF
100,196,465 560 31 − 529 glyoxalase domain-containing protein 5 14.29 ov DE
106,586,502 559 7 − 552 serine/arginine repetitive matrix protein 2-like 42.86 ov DE, DMG, DAC
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BMC Genomics

ISSN: 1471-2164

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