Fig. 3

Pangenome analysis. The core genome in this analysis is defined as gene clusters present in all nine genomes. The shell genome is defined as gene clusters present in two to eight genomes. The cloud genome is defined as gene clusters present in only 1 genome (A). A graph of the pan- and core-genomes was generated with PanGP, which indicated that the WHsTBRF clade pangenome is open and stabilizes after four genomes (B). Also shown is the pangenome matrix (C). The numbers on the right indicate the number of unique gene clusters for each isolate’s genome. In the case of multiple isolates per species (B. hermsii and B. turicatae) the species-specific unique gene clusters are reported first followed by the isolate-specific unique gene clusters (C). Taxa prefixes: btBTE5EL, B. turicatae BTE5EL; bt91E135, B. turicatae 91E135; bvRMA01, B. venezuelensis RMA01; bpSLO, B. parkeri SLO; bpuSUM, B. puertoricensis n. sp. SUM; bcCo53, B. coriaceae Co53; bhDAH, B. hermsii DAH; bhYOR, B. hermsii YOR; baBA2, B. anserina BA2