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Fig. 5 | BMC Genomics

Fig. 5

From: Association mapping reveals a reciprocal virulence/avirulence locus within diverse US Pyrenophora teres f. maculata isolates

Fig. 5

A Manhattan plot for barley lines where the standard BLINK model utilizing the 1–5 Ptm scale phenotyping and accounting for population structure (PC4 or PC15) was identified as the optimal model. Bonferroni correction threshold is indicated by the solid (α-level 0.05) and dashed (α-level 0.01) red lines. SNP density is indicated along the bottom of the plot with the corresponding heat scale shown to the left and the 12 Pyrenophora teres f. maculata chromosomes (Chr) designated below. The QTL designations are given below each chromosome. B QQ plots for corresponding lines within the binary BLINK model Manhattan plot with 95% confidence interval shown by the shaded color. The Manhattan and QQ plots were generated using CMplot [39] in R 3.6.3

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BMC Genomics

ISSN: 1471-2164

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