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Table 2 The counting table of mouse genes and enhancer having enhancer-AS association for different AS types. The row “All” represents the number of genes or enhancers having associations in any types of AS. The column “input” means the number of genes or enhancers which are qualified for the analysis. The column “significant” represents the number of genes or enhancers pass the q-value smaller than 0.05

From: Genome-wide identification of associations between enhancer and alternative splicing in human and mouse

AS type

 

Counting by genes

 

Counting by enhancers

 

Significant

Input

Percentage

 

Significant

Input

Percentage

A5SS

 

541

689

78.52%

 

1479

2984

49.56%

A3SS

 

315

726

43.39%

 

560

2969

18.86%

SE

 

1158

1530

75.69%

 

3183

6319

50.37%

RI

 

939

1210

77.60%

 

2805

5942

47.21%

MSE

 

370

484

76.45%

 

929

1838

50.54%

MXE

 

214

247

86.64%

 

612

986

62.07%

AFE

 

2251

2643

85.17%

 

7865

14,387

54.67%

ALE

 

1762

2170

81.20%

 

5787

11,067

52.29%

ATSS

 

4967

5593

88.81%

 

15,845

27,158

58.34%

ATTS

 

6167

7158

86.16%

 

18,188

36,008

50.51%

All

 

7716

8429

91.54%

 

26,083

45,810

56.94%