Table 2 Comparison of the genome coverage and assigned clade for run116 samples on Nextclade
From: Comparison of SARS-CoV-2 sequencing using the ONT GridION and the Illumina MiSeq
| Â | Coverage (%) | Clade | ||
|---|---|---|---|---|
Sample | GridION | MiSeq | GridION | MiSeq |
K013400 | 72 | 92 | 20C | 20A |
K013408 | 57 | 86 | 20H (Beta, V2) | 20C |
K013410 | 70 | 90 | 20C | 20A |
K013411 | 76 | 93 | 20H (Beta, V2) | 20A |
K013415 | 63 | 91 | 20C | 20A |
K013417 | 63 | 94 | 20C | 20A |
K013418 | 62 | 94 | 20C | 20A |
K013423 | 63 | 91 | 20C | 20A |
K013425 | 60 | 93 | 20C | 20A |
K013426 | 57 | 89 | 20C | 20A |
K013429 | 64 | 95 | 20H (Beta, V2) | 20C |
K013432 | 65 | 93 | 20C | 20A |
K013433 | 50 | 94 | 20C | 20A |
K013434 | 68 | 94 | 20C | 20A |
K013437 | 35 | 92 | 20H (Beta, V2) | 20C |
K013445 | 65 | 91 | 20C | 20A |
K013447 | 92 | 98 | 20A | 20D |
K013449 | 49 | 94 | 20C | 20A |
K013450 | 68 | 97 | 20C | 20A |
K013452 | 68 | 94 | 20C | 20A |
K013454 | 56 | 90 | 20C | 20A |
K013462 | 51 | 92 | 20C | 20A |
K013465 | 60 | 94 | 20C | 20A |
K013467 | 50 | 92 | 20C | 20A |
K013470 | 72 | 89 | 20C | 20H (Beta, V2) |
K013476 | 69 | 91 | 20C | 20H (Beta, V2) |
Total | 20A | 1 | 20 | |
20C | 22 | 3 | ||
20D | 0 | 1 | ||
20H (Beta, V2) | 4 | 3 | ||