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Fig. 3 | BMC Genomics

Fig. 3

From: Comprehensive evaluation of structural variant genotyping methods based on long-read sequencing data

Fig. 3

F1 scores of SV genotyping methods based on real data. a HG002 Tier 1 dataset. b HG002 Tier 2 dataset. c HG005 dataset. The x-axis represents the SV type, and the y-axis shows the F1 score of each SV genotyping method. Performance was estimated on ~ 30× PacBio CLR data. The alignment files were based on minimap2 because it was compatible to all SV genotyping methods. SVJedi and VaPoR are inapplicable to DUPs and TRAs, respectively. INS: insertion, DEL: deletion, DUP: duplication, INV: inversion, TRA: translocation

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