Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping

BMC Genomics

Table 4 Results of de novo analysis for K. pneumoniae genomes - number of assembled scaffolds, number of assembled scaffolds longer than 500 bp, length of the largest scaffold, N50 and L50 values

Genome ID	Number of scaffolds	Number of scaffolds longer than 500 bp	Largest scaffold	N50 for scaffolds longer than 500 bp	L50 for scaffolds longer than 500 bp
KP1179	206	127	59157	16299	13
KP1182	268	147	68150	16519	13
KP1183	121	96	59451	16733	12
KP1188	142	102	60446	22213	10
KP1193	200	129	60144	21442	12
KP1196	166	109	59199	21305	12
KP1205	118	86	64806	22116	10
KP1214	120	94	51750	17243	13
KP1215	140	104	111137	19865	12
KP1216	109	89	63474	22220	11
KP1217	86	79	59905	30956	10
KP1225	95	76	73045	35831	8
KP1226	100	87	70022	21905	10
KP1231	130	95	70024	20544	11
KP1235	152	107	111131	20819	12
KP1237	109	87	44106	22101	12
KP1238	222	122	73045	17527	13
KP1241	323	192	53611	12228	17
KP1251	94	78	97605	22703	8
KP1252	97	82	63474	22636	9
KP1255	94	83	69812	21898	10
KP1256	224	135	53594	16189	14
KP1257	157	104	111195	19885	12
KP1258	150	103	111110	20820	11
KP1261	178	116	111110	20517	12
KP1262	191	115	70026	20540	11
KP1263	98	83	63478	22201	10
KP1267	96	83	80940	22120	9
KP1268	117	81	73010	22061	9
KP1269	182	120	73106	18185	12
KP1273	121	88	70026	21900	10

ISSN: 1471-2164