Table 6 Detected quantitative trait loci (QTL) for Zymoseptoria tritici necrosis and pycnidia resistance in the seedling and the adult plant stages in the ‘Agili39’/Khiar recombinant inbred lines
Chromosome | QTL ID | Isolate | Trait – Physiological stage | LOD | Peak position (cM) | Flanking markers | Confidence Interval (cM) | PVEa (%) | Additif effect |
|---|---|---|---|---|---|---|---|---|---|
1A | Qstb1A | Tun1 | Necrosis-Seedling | 4.6 | 63 | Tag_1694925—Tag_1127081 | 62.5—63 | 16.0 | 36.6 |
Tun6 | Necrosis-Seedling | 4.1 | 63 | Tag_1694925—Tag_1127081 | 62.5—63 | 9.1 | 50.9 | ||
Pycnidia-Seedling | 4.4 | 63 | Tag_1694925—Tag_1127081 | 62.5—63 | 9.9 | 54.1 | |||
IPO91009 | Necrosis-Seedling | 4.1 | 63 | Tag_1694925—Tag_1127081 | 62.5—63 | 9.8 | 38.0 | ||
7As | Qstb7A | IIB123 | Necrosis-Seedling | 4.0 | 53 | Tag_2277193—Tag_100009953 | 52.5—60.5 | 9.0 | 46.2 |
2B | Qstb2B_1 | Tun6 | Necrosis-Seedling | 11.6 | 74 | Tag_1056626 -Tag_111757 | 72.5—75.5 | 29.3 | 91.4 |
Pycnidia-Seedling | 11.9 | 74 | Tag_1056626—Tag_1117572 | 72.5—76.5 | 29.6 | 93.7 | |||
Pycnidia-Adult (F7:8) | 23.4 | 75 | Tag_1056626—Tag_1117572 | 74.5—76.5 | 52.9 | 1.5 | |||
Pycnidia—Adult (F8:9) | 33.9 | 74 | Tag_105662—Tag_1117572 | 72.5—75.5 | 61.6 | 24.4 | |||
IIB123 | Necrosis-Seedling | 12.9 | 74 | Tag_1056626 -Tag_1117572 | 72.5—76.5 | 33.7 | 87.6 | ||
Pycnidia-Seedling | 5.4 | 74 | Tag_1056626—Tag_1117572 | 70.5—76.5 | 17.5 | 38.2 | |||
IPO91004 | Necrsosis-Seedling | 17.3 | 75 | Tag_1056626—Tag_1117572 | 72.5—76.5 | 38.0 | 96.9 | ||
Pycnidia-Seedling | 7.2 | 74 | Tag_1056626—Tag_1117572 | 69.5—76.5 | 21.2 | 52.5 | |||
IPO91009 | Necrosis-Seedling | 9.5 | 74 | Tag_1056626—Tag_1117572 | 73.5—76.5 | 24.6 | 60.1 | ||
IPO95052 | Necrsosis-Seedling | 7.2 | 75 | Tag_1056626—Tag_1117572 | 71.5—76.5 | 21.1 | 77.2 | ||
Pycnidia-Seedling | 3.2 | 74 | Tag_1056626—Tag_1117572 | 72.5—76.5 | 10.0 | 36.0 | |||
Qstb2B_2 | Tun1 | Pycnidia-Adult (F6:7) | 4.8 | 117 | Tag_100031118—Tag_3027184 | 107.5—123 | 14.9 | 0.6 | |
Pycnidia-Adult (F8:9) | 5.5 | 113 | Tag_100031118—Tag_3027184 | 106.5—118.5 | 17.1 | 9.1 | |||
Tun6 | Pycnidia-Adult (F5:6) | 32.8 | 116 | Tag_100031118—Tag_3027184 | 114.5—118.5 | 54.3 | 1.9 |