| hierBAPS Group | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I | II | III | IV | V | VI | VII | Â | IX | X | XI | XII | XIII | XIV | ||
U5a2, U5a2b, U5a2c, U5a2d | U5a2e | U5a1,U5a1g, U5a1i | U5b1, U5b1a, U5b1d, U5b1f, U5b1i, U5b3 | U5b1 + T16189C! U5b1b, U5b1c | U5a1a2 | U5a1h | RSRS (Ancestral) | U5a1d | U5a1c | U5a1a1 | U5b2a | U5b2, U5b2c | U5b2a2 | ||
Number of shared mitochondrial polymorphisms within each U5 hierBAP group (n) | Â | 19 | 21 | 16 | 18 | 19 | 29 | 45 | 1 | 20 | 28 | 21 | 27 | 33 | 35 |
Nucleotide Position | Location | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
146 | HVS-II | Â | T | Â | Â | Â | Â | T | T | Â | T | Â | T | T | T |
150 | HVS-II | Â | Â | T | Â | Â | Â | T | C | Â | Â | Â | T | T | T |
151 | HVS-II | Â | T | Â | Â | Â | Â | Â | C | Â | Â | Â | Â | Â | Â |
152 | HVS-II | Â | C! | T | Â | Â | T | T | T | Â | Â | Â | Â | Â | T |
195 | HVS-II | Â | T | Â | Â | Â | T | T | T | Â | Â | Â | Â | Â | T |
247 | HVS-II | G | G | G | Â | Â | G | G | G | Â | G | G | G | G | G |
523 | HVS-III | Â | Â | Â | Â | Â | Â | A | A | Â | Â | Â | Â | A | Â |
524 | HVS-III | Â | Â | Â | Â | Â | Â | C | C | Â | Â | Â | Â | C | Â |
769 | 12S_rRNA | G | G | G | G | G | G | G | G | G | G | G | Â | G | G |
1303 | 12S_rRNA | Â | Â | Â | Â | Â | Â | A | G | Â | Â | Â | Â | Â | Â |
1700 | 16S_rRNA | Â | Â | Â | Â | Â | C | Â | T | Â | Â | C | Â | Â | Â |
1721 | 16S_rRNA | Â | Â | Â | Â | Â | Â | Â | C | Â | Â | Â | T | T | T |
2757 | 16S_rRNA | Â | Â | Â | Â | Â | Â | Â | A | Â | Â | Â | Â | Â | Â |
3027 | 16S_rRNA | Â | Â | Â | Â | Â | Â | Â | T | C | Â | Â | Â | Â | Â |
3107 | preserves historical genome annotation numbering | Â | Â | Â | Â | Â | d | d | - | Â | Â | Â | Â | Â | d |
3192 | 16S_rRNA | Â | Â | Â | Â | Â | Â | T | C | Â | Â | Â | Â | Â | Â |
3197 | 16S_rRNA | C | C | Â | C | C | C | C | T | C | C | C | C | C | C |
3212 | 16S_rRNA | Â | Â | Â | Â | Â | Â | Â | C | Â | Â | Â | Â | Â | T |
3552 | ND1 (Ala—3rd position in codon) |  |  |  |  |  |  |  | T | C |  |  |  |  |  |
3591 | ND1 (Leu—3rd position in codon) |  |  |  |  |  |  | A | G |  |  |  |  |  |  |
3768 | ND1 (Leu—3rd position in codon) |  | G |  |  |  |  |  | A |  |  |  |  |  |  |
4592 | ND2 (Ser—3rd position in codon) |  |  |  |  |  |  | C | T |  |  |  |  |  |  |
4732 | ND2 (Asn—2nd position in codon) |  |  |  |  |  |  |  | A |  |  |  | G |  | G |
5452 | ND2 (Thr—2nd position in codon) |  |  |  |  |  |  |  | C |  |  |  |  |  |  |
5495 | ND2 (Phe—3nd position in codon) |  |  |  |  |  |  |  | T |  |  | C |  |  |  |
5656 | position between tRNA-Ala and tRNA-Asn | Â | Â | Â | Â | G | Â | Â | A | Â | Â | Â | Â | Â | Â |
7146 | CO1 (Ala—1st position in codon) | A | A | A | A | A | A | A | A |  | A | A |  | A | A |
7256 | CO1 (Asn—3rd position in codon) | C | C | C | C | C | C | C | C | C | C | C | C | C |  |
7521 | tRNA-Asp | G | G | Â | G | G | G | G | G | G | G | G | G | G | G |
7768 | CO2 (Met—3rd position in codon) |  |  |  | G | G |  |  | A |  |  |  | G | G | G |
7853 | CO2 (Val—1st position in codon) |  |  |  |  |  |  |  | G |  |  |  |  |  |  |
8337 | tRNA-Lys | Â | Â | Â | Â | Â | Â | Â | T | Â | Â | Â | Â | Â | Â |
8701 | ATP6 (Ala—1st position codon) | A | A | A |  | A | A | A | A | A | A | A | A | A | A |
8705 | ATP6 (Met—2nd position codon) |  |  |  |  |  |  |  | T |  |  |  |  |  |  |
9477 | CO3 (Val—1st position codon) | A | A | A | A | A | A | A | G | A | A |  | A | A | A |
9540 | CO3 (Leu—1st position codon) | T | T | T | T | T | T | T | T | T | T | T | T | T | T |
10,283 | ND3 (Leu—3rd position codon) |  |  |  |  |  |  |  | A |  |  |  |  |  |  |
10,398 | ND3 (Ala—1st position codon) | A | A | A | A | A | A | A | A | A | A |  | A | A | A |
10,810 | ND4 (Leu—3rd position codon) | T | T | T | T | T |  | T | T | T | T | T | T | T | T |
10,873 | ND4 (Pro—3rd position codon) | T | T |  | T | T | T | T | T | T | T | T | T | T | T |
10,915 | ND4 (Cys—3rd position codon) |  | T | T | T | T | T | T | C | T | T | T | T | T | T |
10,927 | ND4 (Phe—3rd position codon) |  |  |  |  |  |  |  | T |  |  |  |  |  |  |
11,296 | ND4 (Leu—3rd position codon) |  |  |  |  |  |  | T | C |  |  |  |  |  |  |
11,653 | ND4 (Val—3rd position codon) |  |  |  |  |  |  |  | A |  |  |  |  |  |  |
11,914 | ND4 (Thr—3rd position codon) | G | G |  | G |  | G | G | G | G | G |  | G | G | G |
11,938 | ND4 (Leu—3rd position codon) |  |  |  |  |  |  | T | C |  |  |  |  |  |  |
12,308 | tRNA-Leu | Â | G | G | Â | G | G | G | A | G | G | G | G | G | G |
12,346 | ND5 (His—1st position codon) |  |  |  |  |  | T |  | C |  |  |  |  |  |  |
12,372 | ND5 (Leu—3rd position codon) | A | A | A |  | A | A | A | G | A | A | A | A | A | A |
12,406 | ND5 (Val—1st position codon) |  |  |  |  |  |  |  | G |  |  |  |  |  |  |
12,616 | ND5 (Leu—1st position codon) |  |  |  |  |  |  |  | T |  |  |  |  |  |  |
12,618 | ND5 (Leu—3rd position codon) |  |  |  |  |  |  | A | G |  |  |  |  |  |  |
12,634 | ND5 (Ile—1st position codon) |  |  |  |  |  |  |  | A |  |  |  |  |  |  |
12,705 | ND5 (Ile—3rd position codon) |  |  |  |  |  |  |  | C |  |  |  |  |  |  |
13,105 | ND5 (Val—1st position codon) | A |  | A | A | A |  | A | A | A | A | A | A | A | A |
13,145 | ND5 (Ser—2nd position codon) |  |  |  |  |  |  |  | G |  |  |  |  |  |  |
13,276 | ND5 (Val—2nd position codon) |  |  |  |  |  |  |  | A |  |  |  |  |  |  |
13,617 | ND5 (Ile—3rd position codon) |  | C | C |  | C | C | C | T | C | C | C | C | C | C |
13,630 | ND5 (Thr—1st position codon) |  |  |  |  |  |  |  | A |  |  |  |  |  |  |
13,637 | ND5 (Gln—2nd position codon) |  |  |  |  |  |  |  | A |  |  |  | G | C | G |
14,182 | ND6 (Val—1st position codon) |  |  |  |  | C |  |  | T |  |  |  | C |  | C |
14,518 | ND6 (Gly—1st position codon) |  |  |  |  |  |  |  | A |  |  |  |  |  |  |
14,793 | CYB (His—2nd position codon) | G | G |  |  |  | G | G | A | G | G |  |  |  |  |
15,218 | CYB (Thr—1st position codon) |  |  |  |  |  | G | G | A | G | G |  |  |  |  |
15,497 | CYB (Gly—1st position codon) |  |  |  |  |  |  |  | G |  |  |  |  |  |  |
15,511 | CYB (Asn—3rd position codon) |  |  |  |  |  |  |  | T |  |  |  |  |  |  |
15,924 | tRNA-Thr | Â | Â | Â | Â | Â | Â | Â | A | Â | Â | Â | Â | Â | Â |
16,114 | HVS-I | Â | Â | Â | Â | Â | Â | Â | C | Â | Â | Â | Â | Â | Â |
16,129 | HVS-I | Â | Â | Â | G | Â | Â | G | G | Â | Â | G | G | G | G |
16,187 | HVS-I | C | C | Â | C | Â | C | C | C | Â | Â | Â | Â | C | Â |
16,189 | HVS-I | Â | Â | Â | Â | Â | T | Â | T | Â | Â | C! | T!! | Â | Â |
16,192 | HVS-I | Â | T | Â | Â | Â | Â | T | C | Â | Â | T | Â | T | Â |
16,223 | HVS-I | C | C | Â | C | Â | C | C | T | Â | C | Â | Â | C | C |
16,230 | HVS-I | A | Â | Â | A | Â | A | A | G | Â | A | A | A | A | A |
16,239 | HVS-I | Â | Â | Â | Â | Â | Â | T | C | Â | Â | Â | Â | Â | Â |
16,256 | HVS-I | Â | T | Â | Â | Â | Â | T | C | Â | T | Â | Â | Â | Â |
16,270 | HVS-I | Â | Â | Â | Â | Â | Â | Â | C | Â | Â | Â | Â | T | T |
16,278 | HVS-I | Â | C | Â | Â | Â | C | C | C | Â | C | Â | C | C | C |
16,294 | HVS-I | Â | Â | Â | Â | Â | Â | Â | C | Â | Â | Â | Â | Â | Â |
16,311 | HVS-I | Â | C! | Â | Â | Â | Â | T | T | Â | T | Â | Â | T | T |
16,320 | HVS-I | Â | Â | Â | Â | Â | Â | Â | C | Â | T | Â | Â | Â | Â |
16,362 | HVS-I | Â | Â | Â | Â | Â | Â | Â | T | Â | Â | Â | Â | Â | Â |
16,398 | HVS-I | Â | Â | Â | Â | Â | Â | Â | G | Â | Â | Â | Â | Â | A |
16,399 | HVS-I | Â | Â | Â | Â | Â | G | G | A | Â | G | Â | Â | Â | Â |
16,465 | HVS-I | Â | Â | Â | Â | Â | Â | Â | C | Â | Â | Â | Â | Â | Â |
16,519 | HVS-I | Â | Â | Â | Â | Â | Â | T | T | Â | Â | Â | Â | Â | Â |
 | hierBAPS Group | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
XV | XVI | XVII | XVIII | XIX | XX | XXI | XXII | XXIII | XXIV | |
U5b2b | U5b2b1 | U5b1b1a | U5b1b1 | U5b2a1a + C16311T! | U5b2a1a2 | U5a2a | U5a2a2a | U5b1e1 | U5b1e1 (+ T8337C) | |
Number of shared mitochondrial polymorphisms within each U5 hierBAP group (n) | 33 | 36 | 20 | 32 | 32 | 41 | 18 | 40 | 33 | 38 |
Nucleotide Position | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
146 | T | T | Â | T | T | T | Â | T | T | T |
150 | T | T | Â | T | T | T | Â | Â | T | T |
151 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
152 | Â | Â | Â | Â | Â | T | Â | T | Â | Â |
195 | T | T | Â | Â | T | T | Â | T | Â | Â |
247 | G | G | Â | G | Â | G | Â | G | G | G |
523 | Â | A | Â | A | Â | A | Â | A | Â | Â |
524 | Â | C | Â | C | Â | C | Â | C | d | d |
769 | G | G | G | G | G | G | G | G | G | G |
1303 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1700 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
1721 | T | T | Â | Â | T | T | Â | Â | Â | Â |
2757 | Â | Â | Â | Â | Â | Â | Â | Â | G | G |
3027 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
3107 | Â | Â | Â | Â | Â | d | Â | d | Â | d |
3192 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
3197 | C | C | Â | C | C | C | C | C | C | C |
3212 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
3552 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
3591 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
3768 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
4592 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
4732 | Â | Â | Â | Â | G | G | Â | Â | Â | Â |
5452 | Â | Â | Â | Â | Â | T | Â | Â | Â | Â |
5495 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
5656 | Â | Â | G | G | Â | Â | Â | Â | G | G |
7146 | A | A | A | A | A | A | A | A | A | A |
7256 | C | C | C | C | C | C | C | C | C | C |
7521 | Â | G | G | G | G | G | G | G | G | G |
7768 | G | G | G | G | G | G | Â | Â | G | G |
7853 | Â | Â | Â | Â | Â | Â | Â | A | Â | Â |
8337 | Â | Â | Â | Â | Â | Â | Â | Â | Â | C |
8701 | A | A | A | A | A | A | A | A | A | A |
8705 | Â | Â | Â | Â | Â | C | Â | Â | Â | Â |
9477 | A | Â | A | A | A | A | A | Â | A | A |
9540 | T | T | T | T | T | T | Â | T | T | T |
10,283 | Â | Â | Â | Â | Â | Â | Â | Â | G | G |
10,398 | A | A | A | A | A | A | A | A | A | A |
10,810 | T | T | T | T | T | T | T | T | T | T |
10,873 | T | T | T | T | T | T | T | T | T | T |
10,915 | T | T | T | T | T | T | T | T | T | T |
10,927 | Â | Â | Â | C | Â | Â | Â | Â | Â | Â |
11,296 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
11,653 | G | G | Â | Â | Â | Â | Â | Â | Â | Â |
11,914 | G | G | G | G | G | G | Â | G | G | G |
11,938 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
12,308 | G | G | G | G | G | G | G | G | G | G |
12,346 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
12,372 | A | A | A | A | A | A | A | A | A | A |
12,406 | Â | Â | Â | Â | Â | Â | Â | A | Â | Â |
12,616 | Â | Â | Â | Â | Â | Â | Â | Â | C | C |
12,618 | Â | Â | A | A | Â | Â | Â | Â | Â | Â |
12,634 | G | Â | Â | Â | Â | Â | Â | Â | Â | Â |
12,705 | Â | Â | Â | Â | Â | Â | C | Â | Â | Â |
13,105 | A | A | A | A | A | A | A | A | A | A |
13,145 | Â | Â | Â | Â | Â | Â | Â | A | Â | Â |
13,276 | Â | Â | Â | Â | Â | Â | A | Â | Â | Â |
13,617 | C | C | C | C | C | C | C | C | C | C |
13,630 | G | G | Â | Â | Â | Â | Â | Â | Â | Â |
13,637 | G | Â | C | Â | G | G | Â | Â | Â | Â |
14,182 | C | C | Â | C | C | C | Â | Â | C | C |
14,518 | Â | Â | Â | Â | Â | Â | Â | G | Â | Â |
14,793 | Â | Â | Â | Â | Â | Â | G | G | Â | Â |
15,218 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
15,497 | Â | A | Â | Â | Â | Â | Â | Â | Â | Â |
15,511 | Â | Â | Â | Â | C | C | Â | Â | Â | Â |
15,924 | Â | Â | Â | Â | Â | G | Â | Â | Â | Â |
16,114 | Â | Â | Â | Â | Â | Â | Â | A | Â | Â |
16,129 | G | G | Â | Â | Â | G | Â | G | G | G |
16,187 | C | C | Â | C | C | C | Â | C | C | C |
16,189 | Â | T | Â | Â | T!! | T | Â | T | Â | Â |
16,192 | Â | C! | Â | Â | Â | C! | Â | Â | C! | C! |
16,223 | C | C | Â | C | C | C | Â | C | C | C |
16,230 | A | A | Â | A | A | A | Â | A | A | A |
16,239 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
16,256 | Â | Â | Â | Â | Â | Â | Â | T | Â | Â |
16,270 | Â | T | Â | Â | Â | Â | Â | T | T | T |
16,278 | C | C | Â | C | C | C | Â | C | C | C |
16,294 | Â | Â | Â | Â | Â | Â | Â | T | Â | Â |
16,311 | T | Â | Â | T | C! | Â | Â | T | Â | T |
16,320 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
16,362 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
16,398 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
16,399 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
16,465 | Â | Â | Â | Â | Â | Â | Â | T | Â | T |
16,519 | Â | Â | Â | Â | Â | Â | Â | Â | Â | T |