Table 3 Selected QUAST statistics on the PacBio data
species ID | ref | B-assembler | Canu | Unicycler | Flye | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
#ctg | # ctg | dup | mis | # ctg | dup | mis | # ctg | dup | mis | # ctg | dup | mis | |
NCTC13251 | 1 | 1 | 1.004 | 16 | 1 | 1.006 | 16 | 1 | 1.006 | 16 | 1 | 1.004 | 16 |
NCTC13349 | 2 | 2 | 1.001 | 0 | 2 | 1.001 | 0 | 2 | 1.001 | 0 | 2 | 1.001 | 0 |
NCTC13360 | 9 | 9 | 1.001 | 8 | 15 | 1.038 | 20 | 11 | 1.016 | 13 | 10 | 1.014 | 10 |
NCTC13307 | 11 | 10 | 1.001 | 6 | 11 | 1.013 | 2 | 41 | 1.007 | 7 | 11 | 1.036 | 13 |
NCTC3610 | 19 | 108 | 1 | 3 | 204 | 1.032 | 20 | 297 | 1.054 | 5 | 120 | 1.005 | 6 |
NCTC10005 | 3 | 4 | 1.002 | 10 | 10 | 1.023 | 19 | 4 | 1.006 | 15 | 7 | 1.019 | 23 |
NCTC13348 | 2 | 14 | 1.002 | 1 | 19 | 1.015 | 11 | 25 | 1.004 | 3 | 6 | 1.02 | 7 |
NCTC13616 | 1 | 1 | 1 | 2 | 4 | 1.006 | 1 | 1 | 1.002 | 1 | 1 | 1 | 0 |
NCTC13277 | 1 | 1 | 1 | 2 | 3 | 1.004 | 2 | 1 | 1.001 | 0 | 1 | 1 | 0 |
NCTC11192 | 2 | 1 | 1.002 | 1 | 8 | 1.006 | 3 | 5 | 1.003 | 5 | 2 | 1.002 | 3 |
NCTC13626 | 2 | 1 | 1 | 2 | 4 | 1.006 | 2 | 3 | 1.001 | 0 | 1 | 1 | 0 |
NCTC10963 | 4 | 1 | 1.001 | 1 | 2 | 1.004 | 2 | 2 | 1.001 | 2 | 2 | 1.001 | 2 |
NCTC12419 | 1 | 1 | 1.001 | 2 | 1 | 1.003 | 0 | 1 | 1.001 | 0 | 1 | 1 | 0 |
NCTC10833 | 3 | 2 | 1.05 | 4 | 4 | 1.01 | 4 | 7 | 1.025 | 3 | 6 | 1.051 | 8 |