Skip to main content

Table 3 Selected QUAST statistics on the PacBio data

From: B-assembler: a circular bacterial genome assembler

species ID ref B-assembler Canu Unicycler Flye
#ctg # ctg dup mis # ctg dup mis # ctg dup mis # ctg dup mis
NCTC13251 1 1 1.004 16 1 1.006 16 1 1.006 16 1 1.004 16
NCTC13349 2 2 1.001 0 2 1.001 0 2 1.001 0 2 1.001 0
NCTC13360 9 9 1.001 8 15 1.038 20 11 1.016 13 10 1.014 10
NCTC13307 11 10 1.001 6 11 1.013 2 41 1.007 7 11 1.036 13
NCTC3610 19 108 1 3 204 1.032 20 297 1.054 5 120 1.005 6
NCTC10005 3 4 1.002 10 10 1.023 19 4 1.006 15 7 1.019 23
NCTC13348 2 14 1.002 1 19 1.015 11 25 1.004 3 6 1.02 7
NCTC13616 1 1 1 2 4 1.006 1 1 1.002 1 1 1 0
NCTC13277 1 1 1 2 3 1.004 2 1 1.001 0 1 1 0
NCTC11192 2 1 1.002 1 8 1.006 3 5 1.003 5 2 1.002 3
NCTC13626 2 1 1 2 4 1.006 2 3 1.001 0 1 1 0
NCTC10963 4 1 1.001 1 2 1.004 2 2 1.001 2 2 1.001 2
NCTC12419 1 1 1.001 2 1 1.003 0 1 1.001 0 1 1 0
NCTC10833 3 2 1.05 4 4 1.01 4 7 1.025 3 6 1.051 8
  1. # ctg number of assembled contigs, dup. duplication ratio, mis. misassemblies larger than 1kbp