Table 1 Read distribution in chicken genome

WT_1

817,934 (1.09)

465,652 (0.62)

264,356 (0.35)

1,709,799 (2.29)

44,927,089 (60.14)

3,539,667 (4.74)

894,691

(1.20)

1,329,951 (1.78)

951,088

(1.27)

5,371,654

(7.19)

14,436,393

(19.32)

WT_2

850,628 (1.16)

481,034 (0.65)

266,795 (0.36)

1,783,041 (2.43)

43,890,294 (59.73)

3,326,499 (4.53)

809,810

(1.10)

1,233,127 (1.68)

961,875

(1.31)

5,646,153

(7.68)

14,229,717

(19.37)

WT_3

854,892 (1.16)

484,649 (0.66)

270,098 (0.37)

1,807,517 (2.45)

43,846,172 (59.48)

3,296,988 (4.47)

796,623

(1.08)

1,220,494

(1.66)

969,557

(1.32)

5,770,236

(7.83)

14,400,640

(19.53)

shRIP2_1

901,795 (1.11)

542,484 (0.67)

298,909 (0.37)

1,883,579 (2.31)

48,547,638 (59.62)

4,049,765 (4.97)

913,946

(1.12)

1,340,140

(1.65)

975,162

(1.20)

6,235,343

(7.66)

15,737,712

(19.33)

shRIP2_2

811,832 (1.09)

499,462 (0.67)

276,288 (0.37)

1,758,489 (2.36)

44,794,360 (60.05)

3,562,251 (4.78)

799,364

(1.07)

1,188,481

(1.59)

903,916

(1.21)

5,775,924

(7.74)

14,220,256

(19.06)

shRIP2_3

712,708 (1.08)

435,538 (0.66)

246,408 (0.37)

1,554,302 (2.36)

39,621,169 (60.05)

3,136,809 (4.75)

702,608

(1.06)

1,046,395

(1.59)

807,534

(1.22)

5,049,179

(7.65)

12,662,782

(19.19)

APEC_1

1,200,954 (1.59)

513,130 (0.68)

267,424 (0.35)

1,719,332 (2.27)

42,694,064 (56.42)

3,344,929 (4.42)

903,188

(1.19)

1,368,388

(1.81)

942,420

(1.25)

6,327,762

(8.36)

16,388,478

(21.66)

APEC_2

1,089,300 (1.53)

477,721 (0.67)

254,628 (0.36)

1,636,220 (2.30)

40,618,885 (57.14)

3,027,199 (4.26)

816,604

(1.15)

1,247,046

(1.75)

902,012

(1.27)

5,917,683

(8.33)

15,094,873

(21.24)

APEC_3

1,108,637 (1.52)

486,009 (0.67)

258,748 (0.35)

1,654,734 (2.27)

41,844,050 (57.28)

3,137,449 (4.29)

858,367

(1.17)

1,294,858

(1.77)

923,393

(1.26)

5,923,740

(8.11)

15,564,581

(21.31)

shRIP2 + APEC_1

913,505 (1.13)

530,763 (0.66)

293,283 (0.36)

1,893,473 (2.34)

48,220,437 (59.62)

4,036,600 (4.99)

878,217

(1.09)

1,280,225

(1.58)

776,896

(0.96)

6,356,734

(7.86)

15,702,773

(19.41)

shRIP2 + APEC_2

1,005,052 (1.15)

580,628 (0.66)

322,426 (0.37)

2,117,408 (2.42)

52,630,365 (60.20)

4,073,560 (4.66)

880,221

(1.01)

1,301,687

(1.49)

853,729

(0.98)

6,930,910

(7.93)

16,725,203

(19.13)

shRIP2 + APEC_3

893,086 (1.13)

514,527 (0.65)

287,291 (0.36)

1,876,382 (2.37)

47,741,694 (60.37)

3,806,973 (4.81)

824,719

(1.04)

1,214,147

(1.54)

761,941

(0.96)

6,150,964

(7.78)

15,008,025

(18.98)