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Fig. 4 | BMC Genomics

Fig. 4

From: Genomic analysis of two Chinese isolates of hyphantria cunea nucleopolyhedrovirus reveals a novel species of alphabaculovirus that infects hyphantria cunea drury (lepidoptera: arctiidae)

Fig. 4

Genetic diversity of the HycuNPV. For each ORF in HycuNPV, the number of nonsynonymous variants was computed by Circos 0.69 (https://github.com/vigsterkr/circos) [13]. Externally of the circular map ORFs are represented in positive and negative sense. Red label genes represent 38 core genes. Each square of the heatmaps on each ring depicts the number of SNPs per gene. The outer rings show HycuNPV-HB and HycuNPV-BJ against its respective representative genome; the middle ring represents SNPs derived from Chinese HycuNPV isolates whole-genome sequence alignment, while the inner ring with colored histogram summarizes the NSSP of Chinese HycuNPV isolates, the height of each histogram indicates the NSSP value for each ORF, the yellow represents the NSSP value less than 40 × 10− 3 NSS/bp and the orange represents the NSSP value more than 40 × 10− 3 NSS/bp

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BMC Genomics

ISSN: 1471-2164

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