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Table 4 Main processes affected by cadmium treatment

From: Global leaf and root transcriptome in response to cadmium reveals tolerance mechanisms in Arundo donax L

Cluster

Annotation

Gene identifier

Log2FoldChange

Identity %

e-value

Phytohormone action

 14,691.43609

nine-cis-epoxycarotenoid dioxygenase

AT1G78390.1

-3.2009

69

1.18e-179

 14,691.50813

Abscisic acid 8'-hydroxylase 1-related

AT4G19230.1

2.0026

72

0

 14,691.49474

Indole-3-pyruvate monooxygenase YUCCA2-related

AT5G25620.2

-2.6551

60

2.7e-74

 14,691.13200

auxin efflux carrier component 9 (PIN)

AT5G57090.1

6,7678

53

1.50e-52

 14,691.11710

1-Aminocyclopropane-1-carboxylate oxidase 51

AT1G77330.1

3.3103

63

9.05e-115

 14,691.10785

ETHYLENE-INSENSITIVE 2 (EIN2)

AT5G03280.1

1.9616

54

3.91e-46

 14,691.11833

gibberellin 20 oxidase 2

AT5G51810.1

2.9104

60

6.4e-162

 14,691.10408

ROTUNDIFOLIA like 8

AT2G39705.1

7.0488

68

1.12e-09

 14,691.12312

ROTUNDIFOLIA like 15

AT1G68825.1

6.1578

69

4.21e-10

 15,957.0

CLAVATA3/ESR-RELATED 25

AT3G28455.1

6.0686

83

1.21e-4

 14,691.82632

C-TERMINALLY ENCODED PEPTIDE 1

AT5G66815.1

9.4341

74

4.30e-04

Transcription factors

 14,691.27999

Ethylene-Responsive Transcription Factor CRF5-Related

AT2G20880.1

2.4027

92

3.47e-35

 14,691.77282

Ethylene-Responsive Transcription Factor ERF003

AT5G25190.1

7.1758

70

1.54e-12

 15,337.0

AP2-Like Ethylene-Responsive Transcription Factor AIL1

AT1G72570.1

7.117

87

5.02e-117

 14,691.5263

Ethylene-Responsive Transcription Factor ERF071-Related

AT2G47520.1

5.4749

78

1.22e-12

 14,691.17960

Ethylene-Responsive Transcription Factor CRF1-Related

AT3G14230.1

3.9041

96

4.31e-11

 14,691.397

octadecanoid-responsive Arabidopsis AP2/ERF 59

AT1G06160.1

5.2872

61

2.22e-19

 14,691.11372

related to AP2 11

AT5G19790.1

3.196

90

2.84e-14

 14,691.28900

ERF domain protein 11

AT1G28370.1

2.4679

74

1.49e-03

 14,691.32159

DNA-binding superfamily protein member of the ERF (ethylene response factor) subfamily

AT1G15360.1

-2.39

93

2.47e-12

 14,691.82651

bZIP transcription factor family protein

AT1G68640.1

2.4872

63

3.05e-101

 14,691.13800

Basic-leucine zipper (bZIP) transcription factor family protein

AT2G42380.2

3.7627

72

2.05e-42

 19,280.1

WRKY DNA-binding protein 31

AT4G22070.1

6.1847

72

4.18e-63

 14,691.7381

WRKY DNA-binding protein 9

AT1G68150.1

5.7632

63

4.79e-42

 14,691.78281

WRKY DNA-binding protein 33

AT2G38470.1

5.4276

84

6.74e-29

 32,613.0

WRKY DNA-binding protein 46

AT2G46400.1

-2.1896

70

5.80e-14

 14,691.59464

WRKY family transcription factor

AT2G44745.1

-4.8279

77

4.73e-60

 14,691.7255

WRKY DNA-binding protein 50

AT5G26170.1

4.2467

72

1.92e-25

 14,691.57513

Transcription factor BHLH66-Related

AT4G30980.1

2.4623

98

3.22e-24

 14,691.57184

Helix-loop-helix DNA-binding domain (HLH)

AT4G05170.1

-2.2109

83

1.35e-21

 14,691.73182

Transcription factor BHLH71-RELATED

AT1G22490.1

7.0841

82

3.30e-15

 14,691.61708

MYB domain PROTEIN 11-RELATED

AT2G47460.1

-2.8152

85

2.61e-15

 14,691.15951

myb domain protein 24

AT5G40350.1

5.4902

82

3.71e-55

 14,691.40443

Transcription factor RAX2

AT2G36890.1

-2.2491

78

6.01e-21

Nutrient uptake

 14,691.17907

nitrate transporter 2.5

AT1G12940.1

3.835

68

0

 14,691.36103

nitrate reductase 1

AT1G77760.1

4.0674

61

8.24e-145

 14,691.51441

phosphate transporter 1.7

AT3G54700.1

2.1772

71

1.34e-81

 14,691.45899

phosphate transporter 1.4

AT2G38940.1

2.0997

76

0

 14,691.23657

vacuolar iron transporter 1

AT2G01770.1

-2.4401

71

3.72e-58

Cell wall

 20,197.0

pectin methylesterase 61

AT3G59010.1

5.3189

65

3.93e-65

 14,691.66836

Plant invertase/pectin methylesterase inhibitor superfamily

AT5G09760.1

4.3545

62

1.03e-108

 14,691.14990

cinnamoyl coa reductase 1

AT2G33570.1

3.4503

64

2.51e-149

 14,691.6397

laccase-8

AT3G09220.1

3,9852

42

2.24e-74

 14,691.27253

membrane-associated progesterone binding protein 3

AT3G48890.1

2.2593

84

2.72e-16

 14,691.76733

alpha expansin 11

AT1G20190.1

6.7503

73

6.73e-132

 14,691.8155

EG45-LIKE domain containing protein 1 -related

AT4G30380.1

7.2163

61

3.44e-36

Polyamine metabolism

 14,691.48898

Agmatine deiminase

AT5G08170.1

-3.3113

72

1.82e-49

 14,691.6139

Putative lysine decarboxylase family protein

AT2G28305.1

4.1682

82

1.93e-115

ROS scavenging

 14,691.12641

NADPH oxidase 1

AT1G09090.1

7.1387

50

5.55e-4

 14,691.9595

Superoxide dismutase

AT1G08830.2

6.7735

55

2.49e-46

 14,691.24413

Ascorbate peroxidase 3

AT4G35000.1

3.4836

84

7.24e-59

 14,691.9539

Glutathione S-transferase

AT1G78340.1

9.5248

52

9.61e-66

 10,504.0

Catalase

AT1G07890.6

6.3794

39

3.30e-4

 14,691.81808

Glutaredoxin-C5

AT5G14070.1

7.2257

55

4.69e-35

Heavy metal transporters

 14,691.35424

Cadmium / zinc-transporting ATPase HMA3

AT4G30120.1

-3.7045

55

2.90e-42

 27,204.0

Metal transporter Nramp1

AT1G80830.1

3.6765

57

2.06e-70