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Table 3 Comparative mitochondrial architecture in the Dorylaimia subclass

From: Inverted base composition skews and discontinuous mitochondrial genome architecture evolution in the Enoplea (Nematoda)

Organism

ID

Length

A

T

C

G

A + T

G + C

GC

GC_NCR

Dorylaimida: Longidoridae

  Xiphinema pachtaicum

NC_033870

12,489

29.4

39.1

13.7

17.6

68.5

31.3

0.124

0.115

  Paralongidorus litoralis

NC_033868

12,763

32.4

31.5

18.4

17.7

63.9

36.1

-0.018

0.007

  Xiphinema rivesi

NC_033869

12,624

37.4

31.5

16.6

14.5

68.9

31.1

-0.069

0

  Xiphinema americanum

NC_005928

12,626

36.6

29.9

18

15.5

66.5

33.5

-0.075

-0.127

  Longidorus vineacola

NC_033867

13,519

31.7

32

18.8

17.5

63.7

36.3

-0.037

-0.128

Mermithida: Mermithidae

  Strelkovimermis spiculatus

NC_008047

18,030

36

42.5

10.1

11.3

78.5

21.4

0.054

0.047

  Strelkovimermis spiculatus

DQ520860

17,118

35.9

42.7

10.2

11.2

78.6

21.4

0.049

0.047

  Romanomermis iyengari

NC_008693

18,919

39.3

40.2

10.1

10.4

79.5

20.5

0.016

0.03

  Thaumamermis cosgrovei

NC_008046

20,013

32.1

39.3

13.9

14.7

71.4

28.6

0.026

0.011

  Thaumamermis cosgrovei

DQ520858

21,506

31.9

39.4

14

14.7

71.3

28.7

0.025

0.008

  Hexamermis agrotis

NC_008828

24,606

41

37.4

10.7

10.9

78.4

21.6

0.009

0.002

  Romanomermis nielseni

NC_008692

15,546

38.8

40.3

10.3

10.5

79.1

20.8

0.009

0.001

  Romanomermis culicivorax

NC_008640

26,194

41.3

38

10.3

10.4

79.3

20.7

0.007

-0.014

  Agamermis sp.

NC_008231

16,561

36.8

43.7

9.6

9.9

80.5

19.5

0.019

-0.02

Trichinellida: Capillariidae

  Pseudocapillaria tomentosa

 

14,062

38

41.3

9.5

11.2

79.3

20.7

0.083

0.032

  Eucoleus annulatus

NC_056391

14,118

38.3

38.3

12.6

10.9

76.6

23.5

-0.073

-0.288

  Capillaria sp. cat-2018

MH665363

13,624

37

39

12.1

11.9

76

24

-0.007

-0.391

Trichinellida: Trichinellidae

  Trichinella murrelli

NC_025751

16,592

40.7

26.8

22.9

9.7

67.5

32.6

-0.404

-0.37

  Trichinella spiralis

NC_002681

16,706

40.5

26.5

23

9.7

67

32.7

-0.405

-0.371

  Trichinella britovi

NC_025750

16,421

40.6

26.6

23.1

9.8

67.2

32.9

-0.405

-0.395

  Trichinella papuae

NC_025754

17,326

40.2

26.6

22.7

10.4

66.8

33.1

-0.371

-0.412

  Trichinella pseudospiralis

NC_025749

17,667

40.9

26.6

22.6

9.9

67.5

32.5

-0.392

-0.425

  Trichinella nelsoni

NC_025753

15,278

40.6

25.5

24.1

9.8

66.1

33.9

-0.422

-0.46

  Trichinella patagoniensis

KM357412

15,179

40.1

24.9

24.4

9.7

65

34.1

-0.431

-0.485

  Trichinella zimbabwensis

NC_025755

14,244

39.6

25.4

24

11.1

65

35.1

-0.368

-0.502

  Trichinella nativa

NC_025752

14,077

40.4

25.8

23.8

10

66.2

33.8

-0.411

-0.639

Trichinellida: Trichuridae

  Trichuris ovis

NC_018597

13,946

34.5

35.3

15.9

14.4

69.8

30.3

-0.05

0.01

  Trichuris discolor

NC_018596

13,904

33.9

36

15.3

14.9

69.9

30.2

-0.012

-0.033

  Trichuris muris

NC_028621

14,105

35.6

37.8

12.7

13.8

73.4

26.5

0.043

-0.089

  Trichuris muris

AP017703

14,297

35.5

36.4

14.7

13.5

71.9

28.2

-0.043

-0.131

  Trichuris suis

NC_017747

14,436

35.6

35.9

15.1

13.5

71.5

28.6

-0.057

-0.165

  Trichuris trichiura

NC_017750

14,046

33.6

34.5

16.9

15

68.1

31.9

-0.059

-0.263

  Trichuris rhinopiptheroxella

MG189593

14,186

33.4

36

15.4

15.2

69.4

30.6

-0.007

-0.315

  Trichuris sp.

KT449824

13,984

34.2

35

16.5

14.3

69.2

30.8

-0.07

-0.537

  1. All base composition values are shown for the mitochondrial plus strand. The ‘length’ refers to the full length of the mitogenome in bases. Base composition is given in %. GC means GC skew, and GC_NCR is GC skew of all noncoding regions