Table 5 Evaluations on the viral and the 14-bacterial-species data sets. The viral set was clustered with an identity score of 50%; it includes nine clusters representing nine viruses. The 14-bacterial-species set was clustered with multiple identity scores; it includes 14 clusters representing 14 bacterial species. We mark MeShClust v3.0 with “auto” when the threshold is estimated automatically, otherwise a specific threshold is provided to the tool

From: MeShClust v3.0: high-quality clustering of DNA sequences using the mean shift algorithm and alignment-free identity scores