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Table 2 Model comparisons of structure categorizations based on the Deviance Information Criterion (DIC), where the smallest value is considered the best model fit. For simplicity, only models which are an improvement over the model over the best secondary structure model (Table 1) are shown, with the exception of the Structured and IDR model for E. coli. H: helix. E: sheet. C: coil. Superscripts S and D indicate if the secondary structure predictions include predictions from structured regions S or IDRs D, respectively, i.e. S = H SESCS. R = H DEDCD

From: Quantifying shifts in natural selection on codon usage between protein regions: a population genetics approach

  

Groupings

 

Species

Model

I

II

III

IV

V

VI

ΔDIC

 

Y10

H S

H D

E S,D

C S

C D

0

 

Y9

H S

H D

E S

E D

C S

C D

0.46

S. cerevisiae

Y8

H S,D

E S,D

C S

C D

83

 

Y7

H S,D

E S

E D

C S

C D

84

 

Y6

H S

E S

C S

D

117

 

Y5

S

D

466

 

Y1

H S,D

E S,D

C S,D

686

 

E6

H S

E S

C S

D

0

 

E8

H S,D

E S,D

C S

C D

29

E. coli

E10

H S

H D

E S,D

C S

C D

30

 

E7

H S,D

E S

E D

C S

C D

45

 

E9

H S

H D

E S

E D

C S

C D

47

 

E1

H S,D

E S,D

C S,D

77

 

E5

S

D

420