|
Traita
|
Chr
|
Nb SNPsb
|
Top SNPc
|
Position (bp)
|
-log10(P-value)
|
SNP effectd
|
Closest genee
|
|---|
|
BCS-Pb
|
1
|
3
|
OAR1_40030112.1
|
38,809,812
|
6.55
|
3.7
|
PGM1
|
|
BCS-L
|
1
|
1
|
OAR1_40030112.1
|
38,809,812
|
5.87
|
3.3
|
PGM1
|
|
BCS-Pa
|
1
|
2
|
s30054.1
|
40,524,081
|
5.60
|
2.7
|
DNAJC6
|
|
BCS-Sa
|
1
|
3
|
oar3_OAR1_40821987
|
40,821,987
|
6.06
|
2.8
|
LEPR
|
|
BCS-Pb
|
1
|
7
|
oar3_OAR1_40,857,869
|
40,857,869
|
6.90
|
3.5
|
LEPR
|
|
BCS-L
|
1
|
11
|
oar3_OAR1_40890859
|
40,890,859
|
7.44
|
3.9
|
LEPR
|
|
BCS-Pb
|
1
|
2
|
OAR1_42228129.1
|
42,228,129
|
6.03
|
2.9
|
MIER1
|
|
BCS-Sb
|
2
|
1
|
OAR2_204233702.1
|
192,716,355
|
5.51
|
2.5
|
MYO1B, STAT1
|
|
BCS-Pa:W
|
3
|
1
|
OAR3_115100887.1
|
115,100,887
|
5.24
|
2.4
|
SYT1
|
|
BCS-Pb
|
8
|
1
|
s48527.1
|
13,120,875
|
4.84
|
2.0
|
TPD52L1
|
|
BCS-Pa
|
10
|
1
|
OAR10_9706403.1
|
11,281,919
|
5.00
|
2.0
|
PCDH8
|
|
BCS-Pa
|
15
|
1
|
OAR15_26097184.1
|
24,911,875
|
4.82
|
2.3
|
NXPE4
|
|
BCS-Sa
|
15
|
1
|
OAR15_87285774.1
|
78,544,042
|
5.22
|
2.3
|
OR10W1
|
|
BCS-Sa
|
15
|
1
|
OAR15_87912118.1
|
87,912,118
|
4.65
|
2.2
|
–
|
|
BCS-W:Wp
|
16
|
2
|
OAR16_33763548.1
|
31,368,878
|
6.59
|
2.6
|
CCL28
|
|
BCS-W:Wp
|
16
|
1
|
OAR16_34857607.1
|
34,857,607
|
4.99
|
1.9
|
DAB2
|
|
BCS-Pa:L
|
16
|
1
|
OAR16_46544413.1
|
42,819,279
|
5.03
|
2.0
|
CDH6
|
|
BCS-Sa
|
17
|
1
|
s70069.1
|
14,052,727
|
4.47
|
2.3
|
FREM3, GAB1
|
|
BCS-L
|
18
|
1
|
OAR18_31578626.1
|
30,304,217
|
4.65
|
2.4
|
NRG4
|
|
BCS-M:Pa
|
22
|
1
|
OAR22_24239807.1
|
24,239,807
|
4.39
|
1.9
|
SORCS3
|
|
BCS-Pa:L
|
24
|
1
|
OAR24_22245800.1
|
20,494,588
|
4.20
|
1.9
|
HS3ST2
|
|
BCS-W:Wp
|
25
|
1
|
s68395.1
|
32,693,219
|
4.43
|
1.6
|
KCNMA1
|
|
BCS-Pa
|
25
|
1
|
OAR25_39067458.1
|
37,133,591
|
4.75
|
2.5
|
–
|
- a BCS, Body Condition Score; M, Mating; Pa, Early pregnancy; Pb, Two-thirds pregnancy; L, Lambing; Sa, Early suckling; Sb, End of suckling; W, Weaning; Wp, Post-weaning period
- bNumber of significant SNPs in the 1-Mb window
- cThe reported top SNPs are SNPs that have the highest –log10 (P-value) among the significant SNPs that are in 1-Mb windows. SNPs for which –log10 (P-value) reached the genome-wide significance threshold (> 5.98) are reported in bold; the other reported SNPs reached the chromosome-wide significance threshold
- dPercentage of variance explained by SNP
- eAnnotated protein coding genes closest to the top SNP of the QTL region. Chr, chromosome
