Table 1 Genomic regions detected through the DCMS analyses in Pinan cattle 

1: 27.40–27.90

PAXBP1, C1H21orf62

hornless

[14]

1: 82.84–82.89

FAM131A, EIF4G1, PSMD2, CLCN2

disease-relate

[15]

1: 92.80–92.85

NAALADL2

embryo development

[16]

3: 00.18–99.23

CYP4A11

growth traits

[17]

4: 28.90–28.95

MACC1

colorectal carcinoma

[18]

6: 37.14–37.19

MED28, LAP3, FAM184B

disease-relate, milk production

[19, 20]

6: 94.72–94.79

ANTXR2

climate adaptation

[21]

7: 17.00–17.09

ANGPTL4, RAB11B, MARCH2, HNRNPM,

lipid metabolism

[22]

7: 18.44–18.55

CAPS, VMAC, NDUFA11, RANBP3, FUT6, NRTN, PRR22

disease-relate

[23]

7: 18.74–18.79

LOC112447361

8: 60.72–60.77

MELK

disease-relate

[24]

9: 38.98–39.07

REV3L

embryo development

[25]

9: 63.80–64.07

SYNCRIP, SNX14, NT5E

disease-related, immune suppressor

[26,27,28]

9: 104.28–104.33

LOC100300342

12: 11.26–11.31

WBP4

disease-related

[29]

12: 32.06–32.11

URAD, CDX2, FLT3

embryo development, hematopoiesis

[30, 31]

12: 71.96–72.01

LOC100337076

12: 72.44–72.49

LOC112449072

13: 43.42–43.47

LOC112441538, LOC112449293

15: 48.48–48.57

LOC781483, LOC781444, LOC781403

16: 8.92–8.97

LOC789494

16: 44.32–44.41

GPR157, LOC107131287

neuronal differentiation

[32]

18: 44.60–44.67

LSM14A

antiviral immune response

[33]

19: 27.08–27.13

NLGN2, SPEM2, LOC112442746, TMEM102, TMEM256, SPEM1, FGF11, CHRNB1

disease-related

[34,35,36,37,38]

19: 27.50–28.19

TMEM88, NAA38, CYB5D, DNAH2, KDM6B, RANGRF, SLC25A35, ARHGEF15, ODF4, KRBA2, RPL26, RNF222, NDEL1, MYH10

disease-related, growth traits, sperm flagella, milk yield

[39,40,41,42,43,44,45,46,47]

21: 6.20–6.50

CERS3

Congenital Ichthyosis

[48]

22: 36.84–36.91

ADAMTS9

embryo development

[49]

22: 54.36–54.41

SEC13, ATP2B2

immune response

[50, 51]

23: 25.58–25.63

BOLA-DQA2, BOLA-DQB

immune response

[52]

25: 13.46–13.51

PARN

disease-related

[53]

29: 27.34–27.39

LOC787625

29: 27.42–27.47

LOC787694