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Table 3 Examples of enriched gene ontologies and associated genes related to metabolism, viral process and cell division that were down-regulated (p-value ≤ 0.01) by ocean acidification in the olfactory rosette of F2 European Sea Bass (Dicentrarchus labrax) juveniles

From: The extensive transgenerational transcriptomic effects of ocean acidification on the olfactory epithelium of a marine fish are associated with a better viral resistance

GO term

Subcategory

Number of transcripts

Examples of regulated genes

Peptide biosynthetic process

 

105

gtf2h2, mrpl35_37, mrps10-12, mrps21, noa1, ssr1, rs17, rpl18

Carbohydrate derivative biosynthetic process

Tricarboxylic acid cycle

22

aco1, aco2, cs, fh, idh1-3, mdh1, ogdh, pdhb, sdha-c, sucla2

Gluconeogenesis

9

aldoc, eno2, pck2, fpb1, pgk1, slc25a11, slc25a12, smek2, tpi1a,

ATP biosynthetic process

20

atp5l, atp5b, atp5g3, atp5a1, atp5i, atp5f1, atp5g1, atp5o

Oxidation–reduction process

 

266

aldh6a1, cyb5r3, cyb5r4, g6pd, gapdh, ndufs1-7, prdx1-6

Catabolic process

Organic substance catabolic process

169

afg3l1p, capn3, paox, pcsk9, psma6, tpp1, usp14, usp2a

mRNA catabolic process

37

cnot11, ncbp1, ncbp2, pan2, pan3, patl1, smg5, smg8, uba52

Viral process

Viral transcription

15

rl23a, rl37a, rpl19, rpl23, rpl38-39, rps25, rps25, rps27, rps29

Cell division

 

62

ccna2, ccnb1-2, ccne1-2, cdc2, cdc20, cdc34, cdc40, cdk2, fzr1

  1. Several transcripts may originate from the same gene. This list is given as an example, with no attempt to be exhaustive. See Additional files 12,13, and 14 for an enlarged version that include gene description and associated GO terms. GO Gene Ontology