Fig. 2
From: Accurate reconstruction of viral genomes in human cells from short reads using iterative refinement
Comparing the wild-type EBV genome and the reconstructed viral genomes in five random samples by the basic pipeline. Whole-genome alignment (a) and phylogenetic tree analysis (b) show that the reconstructed genomes are similar to the wild-type, but the number of sequencing reads with high MAPQ is low in NPC-60T when they were aligned to the reconstructed genome, both relative to the total number of filtered, trimmed reads (c) and the number of aligned reads (d)