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Table 1 Numbers of piRNA clusters predicted after each filtering step

From: Daphnia magna egg piRNA cluster expression profiles change as mothers age

Predictions Number
ShortStack predicted clusters. 15719
ShortStack clusters containing PingPongPro predicted transposons. 4747
Adult proTRAC cluster predictions. 19
Egg proTRAC cluster predictions. 19
Merged proTRAC cluster predictions. 23
PingPongPro and proTRAC merged predictions. 4732
Average read length filtered clusters. 4653
Final count after clusters overlapping other RNA species were removed. 4606
  1. The final row gives the number of clusters input to differential expression analysis