Table 1 Numbers of piRNA clusters predicted after each filtering step
From: Daphnia magna egg piRNA cluster expression profiles change as mothers age
Predictions | Number |
|---|---|
ShortStack predicted clusters. | 15719 |
ShortStack clusters containing PingPongPro predicted transposons. | 4747 |
Adult proTRAC cluster predictions. | 19 |
Egg proTRAC cluster predictions. | 19 |
Merged proTRAC cluster predictions. | 23 |
PingPongPro and proTRAC merged predictions. | 4732 |
Average read length filtered clusters. | 4653 |
Final count after clusters overlapping other RNA species were removed. | 4606 |