Table 3 PiRNA clusters annotated with TEs by RepeatMasker and eggNOG
From: Daphnia magna egg piRNA cluster expression profiles change as mothers age
Comparison | Upregulated in 1st clutch | Upregulated in 5th clutch | ||||
|---|---|---|---|---|---|---|
Program | RepeatMasker | RepeatMasker known | EggNOG | RepeatMasker | RepeatMasker known | EggNOG |
Eggs | 539 (93%) | 422 (73%) | 140 (24%) | 623 (91%) | 587 (86%) | 294 (42%) |
Eggs, TPM > 1000 | 32 (78%) | 22 (54%) | 7 (17%) | 4 (50%) | 4 (50%) | 0 (0%) |
F0 | 167 (93%) | 154 (86%) | 79 (44%) | 161 (95%) | 144 (85%) | 53 (31%) |
F1 | 30 (97%) | 24 (77%) | 10 (31%) | 21 (95%) | 17 (77%) | 7 (31%) |