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Table 3 PiRNA clusters annotated with TEs by RepeatMasker and eggNOG

From: Daphnia magna egg piRNA cluster expression profiles change as mothers age

Comparison Upregulated in 1st clutch Upregulated in 5th clutch
Program RepeatMasker RepeatMasker known EggNOG RepeatMasker RepeatMasker known EggNOG
Eggs 539 (93%) 422 (73%) 140 (24%) 623 (91%) 587 (86%) 294 (42%)
Eggs, TPM > 1000 32 (78%) 22 (54%) 7 (17%) 4 (50%) 4 (50%) 0 (0%)
F0 167 (93%) 154 (86%) 79 (44%) 161 (95%) 144 (85%) 53 (31%)
F1 30 (97%) 24 (77%) 10 (31%) 21 (95%) 17 (77%) 7 (31%)