Table 1 Quality statistics of original sequencing data and alignment analysis of filtered data with reference genome sequence

RGJ8_0_1

54,855,784

53,608,048

8.04G

97.83

93.58

35,656,422(66.51%)

33,895,916(63.23%)

1,760,506(3.28%)

RGJ8_0_2

50,754,086

49,391,586

7.41G

98.02

93.98

33,894,841(68.62%)

32,215,839(65.23%)

1,679,002(3.4%)

RGJ8_0_3

60,342,940

58,716,810

8.81G

97.92

93.76

41,968,662(71.48%)

39,919,527(67.99%)

2,049,135(3.49%)

RGJ8_1_1

55,763,332

54,758,234

8.21G

97.84

93.58

41,532,205(75.85%)

39,473,934(72.09%)

2,058,271(3.76%)

RGJ8_1_2

54,963,332

53,697,528

8.05G

97.98

93.92

40,923,281(76.21%)

39,087,326(72.79%)

1,835,955(3.42%)

RGJ8_1_3

53,018,150

52,143,466

7.82G

98.06

94.11

38,338,903(73.53%)

36,568,391(70.13%)

1,770,512(3.4%)

RGJ8_2_1

62,021,164

60,915,180

9.14G

97.74

93.36

47,688,641(78.29%)

45,463,907(74.63%)

2,224,734(3.65%)

RGJ8_2_2

65,214,940

64,099,854

9.61G

98.07

94.11

47,955,582(74.81%)

45,694,127(71.29%)

2,261,455(3.53%)

RGJ8_2_3

63,298,644

62,034,718

9.31G

97.9

93.72

47,573,504(76.69%)

45,225,371(72.9%)

2,348,133(3.79%)

RGJ8_3_1

69,201,124

67,485,452

10.12G

97.84

93.58

50,006,430(74.1%)

47,384,881(70.21%)

2,621,549(3.88%)

RGJ8_3_2

77,918,304

76,533,928

11.48G

97.96

93.82

57,958,641(75.73%)

54,988,545(71.85%)

2,970,096(3.88%)

RGJ8_3_3

68,399,538

67,593,522

10.14G

97.91

93.77

51,855,415(76.72%)

49,265,248(72.88%)

2,590,167(3.83%)

RXGH_0_1

60,470,236

59,395,634

8.91G

97.77

93.47

42,773,878(72.02%)

40,808,492(68.71%)

1,965,386(3.31%)

RXGH_0_2

64,126,042

63,252,848

9.49G

98.08

94.18

46,675,900(73.79%)

44,499,900(70.35%)

2,176,000(3.44%)

RXGH_0_3

58,523,750

57,486,536

8.62G

97.82

93.59

42,259,753(73.51%)

40,308,434(70.12%)

1,951,319(3.39%)

RXGH_1_1

59,230,394

58,084,228

8.71G

97.92

93.82

41,855,180(72.06%)

40,072,574(68.99%)

1,782,606(3.07%)

RXGH_1_2

62,660,420

61,717,000

9.26G

97.79

93.49

45,089,703(73.06%)

43,198,530(69.99%)

1,891,173(3.06%)

RXGH_1_3

62,732,322

61,817,364

9.27G

97.78

93.45

46,399,696(75.06%)

44,450,491(71.91%)

1,949,205(3.15%)

RXGH_2_1

74,887,522

73,620,460

11.04G

97.74

93.36

56,299,859(76.47%)

53,684,052(72.92%)

2,615,807(3.55%)

RXGH_2_2

86,367,676

84,896,874

12.73G

97.66

93.14

66,256,302(78.04%)

63,046,641(74.26%)

3,209,661(3.78%)

RXGH_2_3

68,133,460

67,070,154

10.06G

98.34

94.79

51,470,162(76.74%)

49,089,797(73.19%)

2,380,365(3.55%)

RXGH_3_1

59,273,332

58,226,124

8.73G

97.77

93.46

45,695,896(78.48%)

43,444,717(74.61%)

2,251,179(3.87%)

RXGH_3_2

58,250,960

57,096,602

8.56G

97.81

93.5

44,842,303(78.54%)

42,632,664(74.67%)

2,209,639(3.87%)

RXGH_3_3

64,050,116

62,981,048

9.45G

97.91

93.77

49,630,747(78.8%)

47,242,197(75.01%)

2,388,550(3.79%)