Table 1 Comparison of the highest fold change DEGs from E. coli (A) and C. elegans (B) observed in the different pipelines. Data includes only data with greater than 30 reads except for Partek which could not be adjusted
(A) Highest foldchange DEGs in E. coli | ||||
Gene Name | Fold change | |||
CLC | Partek | DNAstar-E | DNAstar-D | |
gadA | -26.80 | -25.97 | -26 | -1.7 |
gadB | -22.84 | -23.54 | -23 | -2.5 |
asr | -17.23 | -17.86 | -17 | -1.6 |
adiA | -16.58 | -17.12 | -17 | -1.7 |
hdeB | -10.80 | -9.934 | -11 | -2.5 |
adiC | -10.11 | NS | -10 | NS |
(B) Highest foldchange DEGs in C. elegans | ||||
Gene name | Fold Change | |||
CLC | DNAstar-E | DNAstar-D | ||
msp-19 | NS | 20.8 | 2.1 | |
col-81 | 14.6 | 14.4 | 1.6 | |
col-139 | 14.4 | 13.7 | 1.7 | |
col-129 | 13.6 | 13.5 | 1.5 | |
col-133 | 6.3 | 5.8 | NS | |
fat-7 | 5.7 | 5.3 | 3.3 | |
asm-3 | 4.9 | 5.0 | 3.0 | |
K08D12.6 | 3.3 | 3.3 | NS | |
rol-8 | - 5.1 | - 4.2 | -1.6 | |
col-17 | - 4.5 | - 4.1 | NS | |
sqt-2 | - 4.4 | - 4.3 | -1.6 | |
cpt-4 | - 4.4 | - 4.4 | - 2.1 | |
F33D4.6 | - 4.4 | - 4.3 | - 1.7 | |