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Table 1 Comparison of the highest fold change DEGs from E. coli (A) and C. elegans (B) observed in the different pipelines. Data includes only data with greater than 30 reads except for Partek which could not be adjusted

From: A transcriptome software comparison for the analyses of treatments expected to give subtle gene expression responses

(A) Highest foldchange DEGs in E. coli
Gene Name Fold change
CLC Partek DNAstar-E DNAstar-D
gadA -26.80 -25.97 -26 -1.7
gadB -22.84 -23.54 -23 -2.5
asr -17.23 -17.86 -17 -1.6
adiA -16.58 -17.12 -17 -1.7
hdeB -10.80 -9.934 -11 -2.5
adiC -10.11 NS -10 NS
(B) Highest foldchange DEGs in C. elegans
Gene name Fold Change
CLC DNAstar-E DNAstar-D
msp-19 NS 20.8 2.1
col-81 14.6 14.4 1.6
col-139 14.4 13.7 1.7
col-129 13.6 13.5 1.5
col-133 6.3 5.8 NS
fat-7 5.7 5.3 3.3
asm-3 4.9 5.0 3.0
K08D12.6 3.3 3.3 NS
rol-8 - 5.1 - 4.2 -1.6
col-17 - 4.5 - 4.1 NS
sqt-2 - 4.4 - 4.3 -1.6
cpt-4 - 4.4 - 4.4 - 2.1
F33D4.6 - 4.4 - 4.3 - 1.7
  1. NS detected but not statistically significant