From: Genetic architecture of end-use quality traits in soft white winter wheat
Traita | SNPb | Chromosome | Position (bp)c | Allelesd | MAFe | P valuef | FDRg | Effect |
---|---|---|---|---|---|---|---|---|
SKCS hardness | S1A_583894689 | 1A | 583,894,689 | T/C | 0.28 | 1.75E-05 | 4.44E-02 | 1.04 |
SKCS hardness | S1B_635869100 | 1B | 635,869,100 | A/G | 0.24 | 3.84E-08 | 5.19E-04 | -1.46 |
SKCS hardness | S3A_690786387 | 3A | 690,786,387 | A/G | 0.23 | 4.73E-06 | 1.60E-02 | 1.72 |
SKCS hardness | S3B_718850970 | 3B | 718,850,970 | C/G | 0.46 | 7.04E-09 | 1.43E-04 | -1.34 |
SKCS hardness | S4D_509798252 | 4D | 509,798,252 | A/G | 0.38 | 1.32E-05 | 3.55E-02 | -0.97 |
SKCS hardness | S5A_480515221 | 5A | 480,515,221 | C/T | 0.14 | 2.91E-19 | 1.18E-14 | -3.34 |
SKCS hardness | S5B_549556474 | 5B | 549,556,474 | G/T | 0.06 | 1.45E-07 | 1.18E-03 | -2.49 |
SKCS hardness | S6B_11537871 | 6B | 11,537,871 | C/T | 0.05 | 5.51E-07 | 3.19E-03 | -3.51 |
SKCS hardness | S6B_130163859 | 6B | 130,163,859 | A/G | 0.18 | 4.98E-07 | 3.19E-03 | -1.47 |
SKCS hardness | S6B_233122036 | 6B | 233,122,036 | T/C | 0.07 | 7.69E-07 | 3.90E-03 | 2.10 |
SKCS hardness | S6B_705613777 | 6B | 705,613,777 | G/A | 0.08 | 1.36E-06 | 6.15E-03 | 2.14 |
SKCS hardness | S7A_12011069 | 7A | 12,011,069 | T/A | 0.05 | 9.44E-06 | 2.73E-02 | 2.85 |
SKCS hardness | S7A_514892901 | 7A | 514,892,901 | A/T | 0.12 | 1.56E-06 | 6.32E-03 | -1.78 |
SKCS hardness | S7B_643501407 | 7B | 643,501,407 | A/G | 0.46 | 5.79E-08 | 5.86E-04 | 1.37 |
SKCS hardness | S7D_56065854 | 7D | 56,065,854 | C/G | 0.17 | 9.33E-06 | 2.73E-02 | 1.32 |
SKCS hardness | S7D_617377539 | 7D | 617,377,539 | C/T | 0.06 | 3.91E-06 | 1.44E-02 | 2.27 |
SKCS size | S1B_569507932 | 1B | 569,507,932 | T/C | 0.47 | 1.19E-06 | 5.36E-03 | 0.02 |
SKCS size | S2B_154846350 | 2B | 154,846,350 | T/G | 0.40 | 1.72E-06 | 6.96E-03 | 0.02 |
SKCS size | S2D_563799166 | 2D | 563,799,166 | G/T | 0.07 | 8.65E-06 | 2.50E-02 | -0.04 |
SKCS size | S2D_586961640 | 2D | 58,6961,640 | A/G | 0.20 | 3.38E-06 | 1.05E-02 | 0.03 |
SKCS size | S3A_60689591 | 3A | 60,689,591 | T/C | 0.32 | 3.84E-07 | 2.25E-03 | -0.02 |
SKCS size | S3A_721092685 | 3A | 721,092,685 | C/G | 0.17 | 2.26E-07 | 1.96E-03 | 0.03 |
SKCS size | S4B_578521140 | 4B | 578,521,140 | T/C | 0.23 | 2.91E-08 | 3.93E-04 | 0.03 |
SKCS size | S5A_578074731 | 5A | 578,074,731 | A/G | 0.21 | 4.99E-07 | 2.53E-03 | -0.03 |
SKCS size | S5A_583031341 | 5A | 583,031,341 | C/T | 0.42 | 2.28E-06 | 7.80E-03 | -0.02 |
SKCS size | S5A_636959783 | 5A | 636,959,783 | T/C | 0.17 | 2.31E-06 | 7.80E-03 | -0.02 |
SKCS size | S5B_615969532 | 5B | 615,969,532 | G/A | 0.08 | 3.89E-07 | 2.25E-03 | 0.04 |
SKCS size | S6B_126632693 | 6B | 126,632,693 | T/G | 0.05 | 1.31E-08 | 2.65E-04 | 0.04 |
SKCS size | S6B_336606108 | 6B | 336,606,108 | T/G | 0.17 | 2.42E-07 | 1.96E-03 | -0.02 |
SKCS size | S6B_583281710 | 6B | 583,281,710 | G/A | 0.11 | 2.86E-10 | 1.16E-05 | 0.04 |
SKCS weight | S1B_427530823 | 1B | 427,530,823 | T/C | 0.15 | 5.42E-07 | 4.39E-03 | -0.87 |
SKCS weight | S2A_165870782 | 2A | 165,870,782 | A/T | 0.38 | 8.34E-07 | 5.63E-03 | 0.64 |
SKCS weight | S2B_18326207 | 2B | 18,326,207 | C/T | 0.23 | 4.55E-07 | 4.39E-03 | 0.63 |
SKCS weight | S2B_533178165 | 2B | 533,178,165 | C/G | 0.09 | 4.42E-07 | 4.39E-03 | -1.11 |
SKCS weight | S2D_563799166 | 2D | 563,799,166 | G/T | 0.07 | 1.16E-05 | 5.22E-02 | -1.04 |
SKCS weight | S2D_613442636 | 2D | 613,442,636 | G/T | 0.05 | 1.77E-06 | 8.96E-03 | 1.36 |
SKCS weight | S6B_583281710 | 6B | 583,281,710 | G/A | 0.11 | 1.77E-07 | 4.39E-03 | 0.75 |
SKCS weight | S7B_686004231 | 7B | 686,004,231 | G/A | 0.09 | 3.31E-07 | 4.39E-03 | -1.15 |
SKCS weight | S7D_7495567 | 7D | 7,495,567 | G/T | 0.05 | 1.14E-06 | 6.57E-03 | 1.42 |
Test weight | S2A_762292662 | 2A | 762,292,662 | T/G | 0.23 | 8.08E-06 | 2.89E-02 | -0.31 |
Test weight | S4B_413497949 | 4B | 413,497,949 | C/T | 0.09 | 4.02E-08 | 5.43E-04 | -0.39 |
Test weight | S5A_611568887 | 5A | 611,568,887 | A/G | 0.25 | 1.79E-08 | 3.62E-04 | 0.24 |
Test weight | S5B_506953332 | 5B | 506,953,332 | T/A | 0.21 | 1.76E-06 | 1.42E-02 | -0.21 |
Test weight | S5B_550910513 | 5B | 550,910,513 | T/C | 0.43 | 3.72E-06 | 2.15E-02 | 0.19 |
Test weight | S5B_605171604 | 5B | 605,171,604 | T/C | 0.09 | 4.76E-06 | 2.15E-02 | 0.27 |
Test weight | S6A_46675024 | 6A | 46,675,024 | C/G | 0.06 | 5.32E-06 | 2.15E-02 | -0.36 |
Test weight | S6A_559428977 | 6A | 559,428,977 | G/A | 0.26 | 2.45E-09 | 9.93E-05 | 0.27 |
Test weight | S6B_510608440 | 6B | 510,608,440 | G/A | 0.08 | 4.91E-06 | 2.15E-02 | 0.40 |
Test weight | S7A_669715941 | 7A | 669,715,941 | T/C | 0.14 | 3.66E-06 | 2.15E-02 | -0.29 |
Test weight | S7B_40194878 | 7B | 40,194,878 | G/C | 0.18 | 2.26E-07 | 2.29E-03 | 0.25 |
Test weight | S7B_636744313 | 7B | 636,744,313 | T/A | 0.17 | 8.54E-06 | 2.89E-02 | 0.28 |
Grain protein | S1A_585175145 | 1A | 58,517,5145 | G/C | 0.10 | 1.33E-05 | 4.48E-02 | 0.28 |
Grain protein | S1B_46883868 | 1B | 46,883,868 | C/A | 0.09 | 1.04E-10 | 4.22E-06 | 0.38 |
Grain protein | S1B_633974958 | 1B | 633,974,958 | A/G | 0.45 | 9.35E-08 | 7.58E-04 | -0.18 |
Grain protein | S2A_612836091 | 2A | 612,836,091 | C/T | 0.05 | 5.91E-06 | 2.18E-02 | -0.31 |
Grain protein | S3B_405161312 | 3B | 405,161,312 | T/C | 0.27 | 2.74E-06 | 1.20E-02 | -0.19 |
Grain protein | S3B_690878020 | 3B | 690,878,020 | T/C | 0.44 | 1.72E-06 | 9.94E-03 | -0.14 |
Grain protein | S4A_352495200 | 4A | 352,495,200 | G/A | 0.10 | 1.61E-06 | 9.94E-03 | -0.23 |
Grain protein | S4B_63121316 | 4B | 63,121,316 | C/T | 0.10 | 3.36E-08 | 3.41E-04 | 0.31 |
Grain protein | S5D_543253602 | 5D | 543,253,602 | G/A | 0.08 | 1.85E-09 | 2.50E-05 | -0.38 |
Grain protein | S6D_471179733 | 6D | 471,179,733 | A/C | 0.05 | 2.95E-06 | 1.20E-02 | 0.52 |
Grain protein | S7A_731026067 | 7A | 731,026,067 | A/T | 0.26 | 1.43E-09 | 2.50E-05 | 0.27 |
Grain protein | SUN_86449317 | UN | 86,449,317 | T/G | 0.19 | 1.45E-05 | 4.53E-02 | 0.22 |
Grain protein | SUN_351152321 | UN | 351,152,321 | A/G | 0.31 | 2.75E-06 | 1.20E-02 | -0.19 |