Genetic architecture of end-use quality traits in soft white winter wheat

BMC Genomics

Table 5 Allelic effect of large-effect markers on end-use quality traits in soft white wheat

Trait	Markers	MAF^a	Alleles^b	N^c	Mean BLUE^d	Tukey's test^e
SKCS hardness	S5A_480515221	0.14	CC	572	25.6	A
			CT	18	20.6	B
			TT	82	18.9	B
	S6B_705613777	0.08	AA	13	32.8	A
			AG	75	24.9	B
			GG	584	24.5	B
SKCS weight	S2B_533178165	0.09	CC	569	39.3	A
			CG	89	37.9	B
			GG	14	35.8	B
Test weight	S4B_413497949	0.09	CC	602	62.1	A
			CT	15	61.3	AB
			TT	55	60.9	B
Grain protein	S1B_46883868	0.09	AA	46	11.9	A
			AC	17	11.8	A
			CC	609	11.1	B
Break flour yield	S1B_653681752	0.14	GG	494	48.3	A
			GT	171	47.3	B
			TT	7	45.5	C
Flour yield	S1B_653681752	0.14	GG	494	69.6	A
			GT	171	68.7	B
			TT	7	66.9	B
	S6B_19335996	0.07	AA	38	67.0	B
			AG	16	68.1	B
			GG	618	69.5	A
Flour ash	S4A_120144412	0.10	CC	49	0.36	B
			CT	29	0.36	B
			TT	594	0.39	A
Milling score	S1D_14707739	0.08	GG	556	84.7	B
			GT	84	86.8	A
			TT	10	88.5	A
	S5A_20640566	0.09	CC	576	85.2	A
			CT	31	85.7	A
			TT	43	82.8	B
Flour protein	S1B_46883868	0.09	CC	609	9.2	B
			CA	17	9.7	A
			AA	46	9.8	A
SDS Sedimentation	S1D_121990680	0.07	GG	16	9.4	B
			GT	58	10.2	AB
			TT	598	10.7	A
	S1D_411063068	0.14	AA	76	11.9	A
			AT	25	10.8	AB
			TT	571	10.5	B
Water SRC	S1B_653681752	0.14	GG	494	54.0	C
			GT	171	55.1	B
			TT	7	58.9	A

^aMinor allele frequency
^bAllele in bold is the favorable allele in soft white wheat
^cNumber of genotypes per marker allele
^dBLUE, best linear unbiased estimators
^eThe letters represent results of Tukey’s HSD test (treatments with different letters are significantly different at 95% level of confidence)

ISSN: 1471-2164