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Fig. 1 | BMC Genomics

Fig. 1

From: Cultivar-specific markers, mutations, and chimerisim of Cavendish banana somaclonal variants resistant to Fusarium oxysporum f. sp. cubense tropical race 4

Fig. 1

Pipeline for identifying unique SNVs in three TBRI Foc TR4–resistant cultivars using RNA-seq data. The numbers of SNV sites retained after each step are indicated. SplitNCigarReads, split reads with N in Cigar; DP, depth coverage; AD, depth of coverage of each allele per sample; QD, variant confidence normalized by the unfiltered depth of variant samples; FS, strand bias estimated using Fisher’s exact test

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