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Table 2 A sample of candidate imprinted genes in Bos taurus

From: Along the Bos taurus genome, uncover candidate imprinting control regions

Cattle

Gene

Full name

chr1

ZBTB21

zinc finger and BTB domain containing 21

chr1

BCL6

BCL6 transcription repressor

Chr3

POU3F1

POU class 3 homeobox 1

chr4

LCORL

ligand dependent nuclear receptor corepressor

chr4

BBS9

Bardet-Biedl syndrome 9

chr5

HMGA2

high mobility group AT-hook 2

chr5

GTSE1

G2 and S-phase expressed 1

chr6

ANKRD17

ankyrin repeat domain 17

chr7

HCN4

hyperpolarization activated cyclic nucleotide gated

chr9

CNR1

cannabinoid receptor 1

chr9

SOBP

sine oculis binding protein homolog

chr10

SIX1

SIX homeobox 1

chr18

TOMM40

translocase of outer mitochondrial membrane

chr19

UNK

unk zinc finger

chr21

GABRA5

gamma-aminobutyric acid type A receptor subunit alpha5

Chr26

PTEN

phosphatase and tensin homolog

Chr26

SUFU

SUFU negative regulator of hedgehog signaling

chr26

CNNM1

cyclin and CBS domain divalent metal cation transport mediator 1

chr26

TM9SF3

transmembrane 9 superfamily member 3

Chr29

RPLP2

ribosomal protein lateral stalk subunit P2

  1. Along chromosomal DNA, robust peaks were randomly selected to identify the genes in their vicinity. According to the strategy: peaks correspond to candidate ICRs; their nearby genes to potential imprinted genes