Table 2 All 9 individually analyzed facilities had evidence of persistent Lm. Groups of Lm from each facility are organized by clonal complex and in some cases group number. I.e. in facility B there were two genetically distinct groups of CC321 isolates based on SNP distance
Facility CC (group #) | Collection Period | Mean (Max) Pairwise SNPs | Isolates (n) | bcrABC (n) | qacH (n) |
|---|---|---|---|---|---|
Facility A CC6 | 2009–2016 | 3.7 (6) | 14 | 0 | 0 |
Facility A ST1048 | 2016–2019 | 4.7 (7) | 4 | 0 | 0 |
Facility B CC321 (1) | 2013–2018 | 1.3 (3) | 14 | 14 | 0 |
Facility B CC321 (2) | 2011–2013 | 3 (5) | 3 | 3 | 0 |
Facility C CC321 | 2011–2017 | 7.1 (18) | 47 | 47 | 9 |
Facility C CC5 | 2004–2017 | 14 (28) | 18 | 0 | 17 |
Facility D CC155 | 2011–2014 | 10 (17) | 7 | 7 | 0 |
Facility D CC199 | 2011–2014 | 11.8 (19) | 4 | 4 | 0 |
Facility D CC321 | 2000–2017 | 13.7 (23) | 20 | 20 | 0 |
Facility E CC6 | 2011–2013 | 5.1 (11) | 9 | 1 | 0 |
Facility E CC155 | 2011–2017 | 10.8 (21) | 15 | 13 | 0 |
Facility F CC6 | 2015–2018 | 11 (20) | 13 | 13 | 0 |
Facility G CC11 | 2012–2019 | 7.8 (16) | 10 | 10 | 0 |
Facility H CC5 | 2016–2019 | 4.1 (7) | 11 | 3 | 0 |
Facility I ST2629 | 2008–2012 | 6.2 (15) | 43 | 0 | 0 |