From: Chromosome-scale assembly and annotation of the perennial ryegrass genome
Completeness categories | Gene models | |||
---|---|---|---|---|
 | v2 | v3 | ||
 | Nr. of hits | % of total | Nr. of hits | % of total |
(A) BUSCO completeness (n=1440) | ||||
Complete BUSCOs (C) | 1340 | 93.1 | 1391 | 96.6 |
Complete and single copy BUSCOs (S) | 1291 | 89.7 | 1331 | 92.4 |
Complete and duplicated BUSCOs (D) | 49 | 3.4 | 60 | 4.2 |
Fragmented BUSCOs (F) | 44 | 3.1 | 27 | 1.9 |
Missing BUSCOs (M) | 56 | 3.8 | 22 | 1.5 |
(B) coreGF completeness (n=7076) | ||||
Represented gene families | 6762 | 95.6 | 6851 | 96.8 |
Missing gene families | 314 | 4.4 | 225 | 3.2 |
coreGF completeness score | 0.938 | Â | 0.956 | Â |
(C) BLAST to reference proteomes | ||||
Barley MIPS HC proteins (26159 sequences) | 23524 | 89.9 | 23977 | 91.7 |
Barley Morex_V2 HC proteins (32787 sequences) | 27637 | 84.3 | 28233 | 86.1 |
B. distachyon v1.0 proteins (31029 sequences) | 26330 | 84.9 | 26815 | 86.4 |