Table 3 Mtb L4 sublineages identified by WGS
Sublineage | Code | T2DM isolatesa | TB isolatesb | Total |
|---|---|---|---|---|
(n = 74) | (n = 74) | (n = 148) | ||
PGG3 | 4.10 | 10 (13.5%) | 19 (25.6%) | 29 (19.5%) |
X | 4.1.1 | 3 (4.0%) | 2 (2.7%) | 5 (3.3%) |
X2 | 4.1.1.1 | 0 (0.0%) | 1 (1.3%) | 1(.06) |
X3/X1 | 4.1.1.3 | 10 (13.5%) | 2 (2.7%) | 12 (8.1%) |
T1;H1 | 4.1.2 | 1 (1.3%) | 2 (2.7%) | 3 (2%) |
Haarlem | 4.1.2.1 | 18 (24.3%) | 7 (9.4%) | 25 (16.8%) |
Ural | 4.2.1 | 7 (9.4%) | 17 (22.9%) | 24 (16.2%) |
LAM3 | 4.3.2 | 5 (6.7%) | 0 (0.0%) | 5 (3.3%) |
LAM9 | 4.3.3 | 10 (13.5%) | 21 (28.3%) | 31 (20.9%) |
LAM1 | 4.3.4.1 | 3 (4.0%) | 1 (1.3%) | 4 (2.7%) |
LAM11 | 4.3.4.2 | 1 (1.3%) | 4 (5.3%) | 5 (3.3%) |
S | 4.4.1 | 1 (1.3%) | 0 (0.0%) | 1(.06) |