Table 1 Details of S. parasuis genomes used in this study.
Strains | Source | Location | Year | Accession No. | complete? | plasmid | Length | cps type |
|---|---|---|---|---|---|---|---|---|
SUT-380 | Healthy pig | Japan | 2013 | AP024277.1 | Y | 2 | 2,109,881 | VI |
SUT-503 | Healthy pig | Japan | 2014 | AP024280.1 | Y | 0 | 2,065,066 | XI* |
SUT-286 | Healthy pig | Japan | 2013 | AP024276.1 | Y | 0 | 2,197,342 | IV |
SUT-7 | Healthy pig | Japan | 2012 | AP024275.1 | Y | 0 | 2,202,836 | V |
BS27 | Patient | China | 2018 | JAETXU000000000.1 | N | / | 1,909,795 | X |
BS26 | Patient | China | 2018 | CP069079.1 | Y | 0 | 1,932,292 | X |
H35 | Healthy pig | China | 2018 | CP076721.1 | Y | 1 | 2,186,318 | XII* |
4253 | Healthy cow | Switzerland | 2018 | SHGT00000000.1 | N | / | 1,881,656 | IX |
86–5192 | Diseased calf | United States | 1980’ | ALLG00000000.1 | N | / | 2,110,166 | I |
88–1861 | Diseased pig | Canada | 1980’ | ALLW00000000.1 | N | / | 2,272,254 | II |
89–4109-1 | Diseased pig | / | 1980’ | ALLL00000000.1 | N | / | 2,176,728 | III |
SUT-319 | Healthy pig | Japan | / | DRX016753 | N | / | 2,129,893 | VI |
SUT-328 | Healthy pig | Japan | / | DRX016754 | N | / | 2,088,627 | VI |
10–36,905 | Healthy Bos taurus | United States | 2010 | WNXH00000000.1 | N | / | 2,148,541 | VII |
2843 | Healthy pig | China | 2014 | POIG00000000.1 | N | / | 2,267,031 | VIII |