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Table 2 Antibiotic resistance genes identified in CI133 and CI172 strains

From: Genomic and proteomic characterization of two strains of Shigella flexneri 2 isolated from infants’ stool samples in Argentina

A-CARD softwad results

CI133 strain

CI172 strain

Gene

Product

Resistance

Hit Type

Ident (%)

Score

E-value

Contig*

Score

E-value

Contig*

cat

Chloramphenicol acetyltransferase

ARO:3,000,387: phenicol antibiotic

Perfect

100

465,692

4,60E-162

NODE_154

465,692

5,00E-165

NODE_208

hns

Global nucleic acid-binding transcriptional dual regulator H-NS

ARO:3,000,008: penam

Perfect

100

276,944

2,56E-88

NODE_17

276,944

3,00E-92

NODE_462

evgA

DNA-binding response regulator in two-component regulatory system EvgAS

ARO:3,000,662: norfloxacin

Perfect

100

417,157

1,93E-142

NODE_106

417,157

2,00E-145

NODE_158

tetD

Transposon Tn10 TetD protein

ARO:0,000,051: tetracycline

Perfect

100

283,493

7,89E-92

NODE_624

283,493

8,00E-95

NODE_307

sat

Streptothricin acetyltransferase

ARO:3,000,034: nucleoside antibiotic

Perfect

100

365,925

2,88E-123

NODE_170

365,925

3,00E-126

NODE_6

marA

DNA-binding transcriptional dual activator of multiple antibiotic resistance

ARO:0,000,001: fluoroquinolone antibiotic

Perfect

100

266,544

1,63E-84

NODE_122

ND

–––

–––

B- ResFinder: Identifcation of acquired antibiotic

CI133 strain

CI172 strain

Gene

Phenotype

Accession No

Identity

Contig

Position in contig

Identity

Contig

Position in contig

blaOXA-1

Amoxicillin, amoxicillin + clavulanic acid, ampicillin, ampicillin + clavulanic acid, cefepime, piperacillin, piperacillin + tazobactam

HQ170510

100

NODE_154

7038..7868

100

NODE_208

113..943

catA1

Chloramphenicol

V00622

100

NODE_154

303..962

ND

––

––

aadA1

Spectinomycin, streptomycin

JQ480156

100

NODE_170

1950..2738

100

NODE_6

3482..4270

dfrA1

Trimethoprim

X00926

100

NODE_170

3415..3888

100

NODE_6

2332..2805

mdf(A)

Unknown macrolide, aminoglycoside, tetracycline, fluoroquinolone phenicol, and rifamycin

Y08743

100

NODE_175

32,621..33847

ND

––

––

sitABCD

Hydrogen peroxide

AY598030

100

NODE_224

596..4045

ND

––

––

tetB

Doxycycline, tetracycline, minocycline

AF326777

100

NODE_624

1153..2358

100

NODE_307

1151..2356

  1. ND Not determined, Contig* The contig containing drugs determinant resistance gene was identified by BlastN