Genomic and proteomic characterization of two strains of Shigella flexneri 2 isolated from infants’ stool samples in Argentina

Table 6 Intact prophage regions identified by PHAST software into the CI133 and CI172 genomes

Region	Region Length	SCORE	CDS N°	Region Position	Contigs involved	Possible Phage	GC (%)
CI133 strain
1	14.5 Kb	100	23	1,273,949–1,288,451	NODE_59_length_95536^a	PHAGE_Salmon_118970_sal3_NC_031940	50.67%
4	42.9 Kb	150	22	3,351,842–3,394,802	NODE_298_length_13180 NODE_300_length_4451 NODE_303_length_8775 NODE_304_length_4965 NODE_305_length_11191	PHAGE_Phage_Gifsy_1_NC_010392	50.40%
6	38.8 Kb	140	29	3,715,134–3,753,956	NODE_378_length_11128^a NODE_379_length_11536 NODE_387_length_2174 NODE_388_length_2179 NODE_389_length_2269 NODE_390_length_3407 NODE_391_length_1539 NODE_394_length_10168 NODE_398_length_21406^a	PHAGE_Entero_mEp460_NC_019716	50.77%
12	36.4 Kb	100	30	4,298,371–4,334,788	NODE_916_length_55721^a NODE_925_length_549 NODE_937_length_1867 NODE_948_length_5860 NODE_950_length_762 NODE_954_length_3661 NODE_976_length_528 NODE_980_length_575 NODE_1017_length_47747^a	PHAGE_Entero_BP_4795_NC_004813	48.57%
CI172 strain
1	14 Kb	130	21	1,034,005–1,048,079	NODE_60_length_29546^a NODE_63_length_8773	PHAGE_Phage_Gifsy_1_NC_010392	51.61%
2	14.5 Kb	100	22	1,119,930–1,134,432	NODE_64_length_94539^a	PHAGE_Salmon_118970_sal3_NC_031940	50.67%
4	38.3 Kb	110	11	3,001,801–3,040,120	NODE_215_length_64273^a NODE_217_length_11752 NODE_218_length_11762 NODE_220_length_1372 NODE_221_length_5430^a	PHAGE_Entero_mEp460_NC_019716	52.05%

ISSN: 1471-2164