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Table 9 Experimental proteins detection in CI133 or CI172 strains

From: Genomic and proteomic characterization of two strains of Shigella flexneri 2 isolated from infants’ stool samples in Argentina

Accession IDa

Gene

Description

Coverage (%)

Number of matching peptides

MW (kDa)

Calculated IP

COGb

CI133 strain

 Q83SN2

secA

Protein translocase subunit SecA OS = Shigella flexneri OX = 623 GN = secA PE = 3 SV = 1

16.98

44

102

5.6

U

 Q821A7

pssA

Phosphatidylserine synthase OS = Shigella flexneri OX = 623 GN = pssA PE = 4 SV = 2

22.39

20

52.8

9.07

I

 Q83R07

SF301_0227/SF2075

Putative enzyme of sugar metabolism OS = Shigella flexneri OX = 623 GN = SF2075 PE = 4 SV = 1

38.69

21

29.7

5.62

M/G

 Q83RW2

appA

Phosphoanhydride phosphorylase pH 2.5 acid phosphatase OS = Shigella flexneri OX = 623 GN = appA PE = 4 SV = 4

24.54

15

47.1

6.35

S

 Q83R69

ptrB

Protease II OS = Shigella flexneri OX = 623 GN = ptrB PE = 4 SV = 1

9.77

10

79.4

6.04

E

 P60788

lepA

Elongation factor 4 OS = Shigella flexneri OX = 623 GN = lepA PE = 3 SV = 1

25.21

24

66.5

5.59

M

 Q7UBC6

plsB

Glycerol-3-phosphate acyltransferase OS = Shigella flexneri OX = 623 GN = plsB PE = 3 SV = 1

10.16

19

93.7

8.51

I

 P59609

argG

Argininosuccinate synthase OS = Shigella flexneri OX = 623 GN = argG PE = 3 SV = 2

30.43

27

49.9

5.39

E

 P0A9K0

pheA

Bifunctional chorismate mutase/prephenate dehydratase OS = Shigella flexneri OX = 623 GN = pheA PE = 3 SV = 1

25.91

18

43.1

6.68

E

 Q83LN3

pncB

Nicotinate phosphoribosyltransferase OS = Shigella flexneri OX = 623 GN = pncB PE = 3 SV = 4

16.75

15

45.9

6.7

H

 Q83SM9

guaC

GMP reductase OS = Shigella flexneri OX = 623 GN = guaC PE = 3 SV = 1

13.54

17

37.4

6.54

F

 A0A0H2UYQ5

acrB

Efflux pump membrane transporter OS = Shigella flexneri OX = 623 GN = acrB PE = 3 SV = 1

6.20

9

113.6

5.63

V

 Q83JU0

visC

Uncharacterized protein OS = Shigella flexneri OX = 623 GN = visC PE = 4 SV = 1

8.25

4

44.2

7.06

S

 P0ABN8

dcuA

Anaerobic C4-dicarboxylate transporter DcuA OS = Shigella flexneri OX = 623 GN = dcuA PE = 3 SV = 1

2.31

4

45.7

7.75

C

 Q83PJ4

asnA

Aspartate–ammonia ligase OS = Shigella flexneri OX = 623 GN = asnA PE = 3 SV = 1

26.67

9

36.6

5.87

E

 Q83QV4

ccmF

Cytochrome c-type biogenesis protein OS = Shigella flexneri OX = 623 GN = ccmF PE = 4 SV = 1

3.55

4

71.3

9.63

O/C

CI172 strain

 A0A0H2UZT3

yncB

Putative oxidoreductase OS = Shigella flexneri OX = 623 GN = yncB PE = 4 SV = 1

25.13

42

43.5

6.54

C/R

 P0AGE8

chrR

Quinone reductase OS = Shigella flexneri OX = 623 GN = chrR PE = 3 SV = 1

72.87

34

20.4

5.15

R

 P0A733

mgsA

Methylglyoxal synthase OS = Shigella flexneri OX = 623 GN = mgsA PE = 3 SV = 1

32.89

4

16.9

6.64

G

 Q83K78

pdxK

Pyridoxine/pyridoxal/pyridoxamine kinase OS = Shigella flexneri OX = 623 GN = pdxK PE = 3 SV = 1

26.86

25

30.9

5.34

H

 P64466

ydfZ

Putative selenoprotein YdfZ OS = Shigella flexneri OX = 623 GN = ydfZ PE = 3 SV = 1

26.87

8

7.3

8.21

C/E

 P0ADZ6

rpsO

30S ribosomal protein S15 OS = Shigella flexneri OX = 623 GN = rpsO PE = 3 SV = 2

49.44

11

10.3

10.4

J

 Q83JU4

dsbC

Thiol:disulfide interchange protein OS = Shigella flexneri OX = 623 GN = dsbC PE = 3 SV = 1

21.19

10

25.6

6.79

O

 Q83PE8

fdhE

Protein FdhE homolog OS = Shigella flexneri OX = 623 GN = fdhE PE = 3 SV = 1

9.06

7

34.7

5.35

O

 Q83ME5

panB

3-methyl-2-oxobutanoate hydroxymethyltransferase OS = Shigella flexneri OX = 623 GN = panB PE = 3 SV = 1

17.05

5

28.2

5.78

H

 Q83J34

xylB

Xylulose kinase OS = Shigella flexneri OX = 623 GN = xylB PE = 3 SV = 1

9.92

6

52.6

5.8

G

 P0A7F2

pyrH

Uridylate kinase OS = Shigella flexneri OX = 623 GN = pyrH PE = 3 SV = 2

35.27

8

26

7.39

F

 Q83SP1

leuB

3-isopropylmalate dehydrogenase OS = Shigella flexneri OX = 623 GN = leuB PE = 3 SV = 3

11.29

4

39.5

5.38

E

  1. aAccession number of Uniprot database
  2. bClusters of Orthologous groups (COG): U-Intracellular trafficking, secretion, and vesicular transport; I-Lipid transport and metabolism, M-Cell wall/membrane/envelope biogenesis, G-Carbohydrate transport and metabolism, E-Amino acid transport and metabolism, H-Coenzyme transport and metabolism, F-Nucleotide transport and metabolism, V-Defense mechanisms, C-Energy production and conversion, O-Posttranslational modification, protein turnover, chaperones, R-General function prediction only, J-Translation, ribosomal structure and biogenesis, S-Function unknown
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BMC Genomics

ISSN: 1471-2164

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