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Table 2 Co-localization of different types of variation. Pearson correlation coefficient r-values based on 500 kb windows in autosomes are shown in the upper triangle; p-values are shown in the lower triangle

From: Structural variants and tandem repeats in the founder individuals of four F2 pig crosses and implications to F2 GWAS results

 

SNPs

Small indels

SVs

TRs

pTRs

SNPs

 

0.87

0.48

-0.43

0.57

Small indels

p < 2.2e-16

 

0.49

-0.43

0.55

SVs

p < 2.2e-16

p < 2.2e-16

 

-0.23

0.36

TRs

p < 2.2e-16

p < 2.2e-16

p < 2.2e-16

 

0.01

pTRs

p < 2.2e-16

p < 2.2e-16

p < 2.2e-16

p < 0.37

 
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BMC Genomics

ISSN: 1471-2164

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