Table 1 Exon and splice completeness of transcript assemblies
Read type | Feature | Read counta | Number | Coding transcripts (%)b | Noncoding transcripts (%)b | ||
|---|---|---|---|---|---|---|---|
Complete (100%) | Missing (0%) | Complete (100%) | Missing (0%) | ||||
Simulated short read | Exon | 10Â m | 20 | 39.94 (0.1) | 56.7 (0.09) | 21.01 (0.06) | 77.68 (0.07) |
| Â | Exon | 20Â m | 10 | 47.04 (0.07) | 50.0 (0.08) | 25.14 (0.15) | 73.21 (0.15) |
| Â | Exon | 50Â m | 4 | 54.9 (0.11) | 42.43 (0.12) | 31.22 (0.1) | 66.62 (0.1) |
| Â | Exon | 100Â m | 2 | 59.85 (0.03) | 37.63 (0.01) | 35.98 (0.02) | 61.37 (0.05) |
| Â | Exon | 200Â m | 1 | 63.86 (0.0) | 33.8 (0.0) | 40.82 (0.0) | 55.98 (0.0) |
| Â | Splice | 10Â m | 20 | 39.94 (0.1) | 56.73 (0.09) | 21.01 (0.06) | 77.79 (0.08) |
| Â | Splice | 20Â m | 10 | 47.04 (0.07) | 50.03 (0.08) | 25.14 (0.16) | 73.37 (0.16) |
| Â | Splice | 50Â m | 4 | 54.9 (0.11) | 42.47 (0.12) | 31.22 (0.1) | 66.86 (0.1) |
| Â | Splice | 100Â m | 2 | 59.85 (0.03) | 37.65 (0.01) | 35.98 (0.02) | 61.65 (0.07) |
| Â | Splice | 200Â m | 1 | 63.85 (0.0) | 33.83 (0.0) | 40.82 (0.0) | 56.37 (0.0) |
Long read | Exon | 25% | 4 | 61.15 (0.15) | 34.66 (0.17) | 39.27 (0.13) | 53.62 (0.18) |
| Â | Exon | 50% | 2 | 76.28 (0.06) | 20.0 (0.05) | 58.78 (0.02) | 33.27 (0.05) |
| Â | Exon | 75% | 1 | 87.54 (0.0) | 10.05 (0.0) | 77.33 (0.0) | 17.01 (0.0) |
| Â | Splice | 25% | 4 | 61.0 (0.14) | 34.68 (0.17) | 39.35 (0.15) | 53.79 (0.16) |
| Â | Splice | 50% | 2 | 76.12 (0.04) | 20.02 (0.05) | 58.87 (0.04) | 33.37 (0.08) |
| Â | Splice | 75% | 1 | 87.35 (0.0) | 10.06 (0.0) | 77.34 (0.0) | 17.08 (0.0) |