Statistic at SNP level | Smoothed statisctic | Description | Reference |
---|---|---|---|
ΔSNP | t-∆SNP | Allele frequency difference (ΔSNP) smoothed by tri-cube kernel function for sliding window W | |
AFDexp | Allele frequency difference smoothed (ΔSNP) by Loess regression function in blocks of markers of size W condidered as genetic unit | [32] | |
G | Gprime | G statistic value smoothed by tri-cube kernel function for sliding window W | |
EDm | ED100 | Fourth power of cumulative Euclidean distance at SNP level (EDm) of 100 consecutive SNPs | |
LOD | SmLOD | Maximum-likehood statistic smoothed for tri-cube kernel function for sliding window W | [30] |