Table 1 Nucleotide compositions and properties of VP4 coding sequences for RVA P genotypes
From: Codon usage of host-specific P genotypes (VP4) in group A rotavirus
Categories | Human genotypes | Porcine genotypes | Zoonotic genotypes | |||||
|---|---|---|---|---|---|---|---|---|
P[4] | P[8] | P[13] | P[23] | P[1] | P[6] | P[7] | P[19] | |
A | 0.374(0.002) | 0.377(0.005) | 0.361(0.001) | 0.359(0.003) | 0.366(0.006) | 0.354(0.003) | 0.360(0.004) | 0.357(0.002) |
U | 0.314(0.001) | 0.309(0.002) | 0.279(0.002) | 0.284(0.001) | 0.267(0.001) | 0.299(0.003) | 0.278(0.005) | 0.305(0.002) |
G | 0.164(0.001) | 0.160(0.004) | 0.182(0.001) | 0.179(0.002) | 0.190(0.000) | 0.178(0.003) | 0.175(0.002) | 0.172(0.003) |
C | 0.148(0.001) | 0.154(0.002) | 0.178(0.001) | 0.179(0.001) | 0.177(0.005) | 0.170(0.002) | 0.187(0.003) | 0.167(0.002) |
AU | 0.688(0.002) | 0.686(0.005) | 0.641(0.002) | 0.643(0.003) | 0.633(0.005) | 0.653(0.004) | 0.638(0.002) | 0.662(0.004) |
GC | 0.312(0.002) | 0.314(0.005) | 0.359(0.002) | 0.357(0.003) | 0.367(0.005) | 0.348(0.004) | 0.362(0.002) | 0.338(0.004) |
GC1 | 0.396(0.003) | 0.395(0.004) | 0.435(0.005) | 0.433(0.004) | 0.441(0.003) | 0.425(0.005) | 0.431(0.004) | 0.410(0.001) |
GC2 | 0.384(0.002) | 0.385(0.003) | 0.414(0.002) | 0.419(0.002) | 0.410(0.003) | 0.390(0.006) | 0.424(0.002) | 0.394(0.003) |
GC3 | 0.157(0.005) | 0.162(0.014) | 0.229(0.003) | 0.220(0.005) | 0.251(0.009) | 0.228(0.007) | 0.231(0.005) | 0.211(0.011) |
A3 | 0.558(0.004) | 0.575(0.016) | 0.567(0.002) | 0.571(0.008) | 0.574(0.021) | 0.525(0.009) | 0.558(0.018) | 0.515(0.007) |
U3 | 0.497(0.006) | 0.475(0.006) | 0.387(0.005) | 0.393(0.004) | 0.362(0.008) | 0.436(0.008) | 0.393(0.013) | 0.461(0.008) |
G3 | 0.137(0.004) | 0.126(0.018) | 0.178(0.005) | 0.182(0.008) | 0.210(0.005) | 0.177(0.008) | 0.166(0.010) | 0.162(0.010) |
C3 | 0.076(0.007) | 0.091(0.006) | 0.124(0.003) | 0.108(0.003) | 0.121(0.007) | 0.124(0.007) | 0.134(0.006) | 0.117(0.008) |