Table 1 Genome statistics and gene content of nuclear and mitochondrial Sporothrix genomes examined in this study
Nuclear genome statistics | S. phasma CBS 119588 | S. protearum CBS 116654 | S. variecibatus CBS 121960 | S. curviconia CBS 959.73 |
|---|---|---|---|---|
Total sequenced bases | 883,093,002 | 947,624,674 | 919,509,964 | 542,611,844 |
Number of raw reads | 128,870 | 109,238 | 106,098 | 87,407 |
Mean raw read length (bp) | 6852.6 | 8674.9 | 8666.6 | 6207.9 |
Maximum raw read length (bp) | 50,542 | 44,789 | 41,751 | 41,000 |
Number of corrected reads | 114,302 | 104,897 | 101,452 | 78,181 |
Mean corrected read length (bp) | 4889.5 | 6870.3 | 6897.2 | 4994.7 |
Maximum corrected read length (bp) | 48,834 | 41,999 | 41,488 | 37,743 |
Mapped reads (%) | 95.7 | 97.3 | 96.5 | 93.4 |
Number of total contigs | 140 | 40 | 21 | 433 |
Largest contig (bp) | 1,661,333 | 5,717,463 | 6,938,270 | 801,994 |
Genome size (bp) | 30,907,658 | 38,728,587 | 38,959,714 | 35,054,974 |
GC content (%) | 57.1 | 52.2 | 52.8 | 54.6 |
Coverage depth (mean) | 23x | 22x | 22x | 13x |
Coverage ≥1x (%) | 99.98 | 100 | 100 | 99.94 |
N50 (bp) | 524,569 | 1,791,310 | 4,206,442 | 153,870 |
N75 (bp) | 277,398 | 1,374,249 | 3,677,956 | 83,002 |
L50 (bp) | 20 | 6 | 4 | 71 |
L75 (bp) | 39 | 12 | 6 | 149 |
Total genes | 8142 | 8691 | 9502 | 8519 |
Protein-coding genes | 7916 | 8443 | 9289 | 8330 |
Ribosomal RNAs (rRNAs) | 25 | 40 | 22 | 21 |
Transfer RNAs (tRNAs) | 201 | 208 | 191 | 168 |
Pseudo-tRNAs | 25 | 14 | 12 | 16 |
Mitochondrial genome statistics | ||||
Number of total contigs | 1 | 1 | 1 | 1 |
Mitogenome size (bp) | 58,395 | 32,517 | 25,765 | 33,128 |
GC content (%) | 24.8 | 24.9 | 25.7 | 24.8 |
Number of mapped reads | 4700 | 903 | 922 | 1504 |
Coverage depth (mean) | 414x | 144x | 144x | 211x |
Total genes | 56 | 43 | 40 | 44 |
Protein-coding genes | 25 | 16 | 15 | 18 |
Ribosomal RNAs (rRNAs) | 2 | 2 | 2 | 2 |
Transfer RNAs (tRNAs) | 26 | 25 | 23 | 24 |