Table 2 Categories of transposable elements and simple and low complexity DNA repeats detected in Sporothrix genomes
Class I retrotransposons | S. phasma CBS 119588 | S. protearum CBS 116654 | S. variecibatus CBS 121960 | S. curviconia CBS 959.73 |
|---|---|---|---|---|
Unidentified LTR element | 0 | 4 | 2 | 0 |
LTR Copia | 0 | 52 | 0 | 0 |
LTR DIRS | 0 | 0 | 2 | 0 |
LTR ERV1 | 0 | 14 | 20 | 0 |
LTR ERVK | 0 | 8 | 6 | 2 |
LTR ERVL | 0 | 2 | 0 | 0 |
LTR ERVL-MaLR | 0 | 0 | 0 | 2 |
LTR Gypsy | 3 | 198 | 62 | 38 |
LTR Ngaro | 0 | 126 | 104 | 98 |
LTR Pao | 0 | 188 | 180 | 187 |
LINE CR1 | 39 | 0 | 0 | 0 |
LINE CR1-Zenon | 0 | 2 | 0 | 0 |
LINE I | 0 | 8 | 8 | 2 |
LINE I-Jockey | 6 | 12 | 6 | 4 |
LINE L1 | 4 | 14 | 10 | 6 |
LINE L1-Tx1 | 0 | 4 | 0 | 4 |
LINE L2 | 25 | 2 | 2 | 0 |
LINE Penelope | 9 | 4 | 2 | 0 |
LINE R1 | 0 | 4 | 2 | 4 |
LINE R2 | 0 | 0 | 0 | 2 |
LINE Rex-Babar | 0 | 2 | 4 | 0 |
LINE RTE | 0 | 0 | 0 | 2 |
LINE RTE-BovB | 33 | 0 | 4 | 0 |
SINEs | 21 | 20 | 20 | 12 |
Total class I TEs | 140 | 664 | 434 | 363 |
Class II DNA transposons | ||||
Unidentified DNA element | 1 | 12 | 4 | 8 |
CMC-EnSpm | 0 | 30 | 14 | 10 |
CMC-Transib | 0 | 0 | 2 | 0 |
Crypton-A | 0 | 2 | 0 | 0 |
Crypton-V | 0 | 0 | 0 | 2 |
Dada | 0 | 8 | 10 | 16 |
Ginger-1 | 0 | 2 | 2 | 0 |
hAT | 0 | 2 | 0 | 2 |
hAT-Ac | 34 | 42 | 38 | 26 |
hAT-Charlie | 0 | 0 | 0 | 4 |
hAT-Tip100 | 0 | 2 | 0 | 2 |
Kolobok-T2 | 0 | 0 | 2 | 4 |
Maverick | 0 | 4 | 2 | 2 |
Merlin | 0 | 2 | 0 | 0 |
MULE-MuDR | 1 | 0 | 0 | 0 |
MULE-NOF | 0 | 2 | 10 | 6 |
PIF-Harbinger | 0 | 4 | 4 | 2 |
TcMar | 0 | 2 | 0 | 0 |
TcMar-ISRm11 | 0 | 0 | 0 | 2 |
TcMar-Tc1 | 0 | 0 | 4 | 2 |
TcMar-Tigger | 7 | 0 | 0 | 0 |
Zisupton | 0 | 6 | 4 | 12 |
RC_Helitron | 22 | 26 | 26 | 18 |
Total class II TEs | 65 | 146 | 122 | 118 |
Total transposons detected | 205 | 810 | 556 | 481 |
DNA repeats | ||||
Simple | 15,733 | 145,298 | 125,360 | 163,539 |
Low complexity | 1983 | 32,284 | 23,332 | 32,798 |