Skip to main content

Table 1 Scaffolds length distribution and classic contiguity indicators to evaluate the genome assembly of D. koepferae (genotype F) and its functional annotation. The BUSCO parameters are used to estimate the assembly completeness based on the expected gene content. All values were also calculated for the reference genome of D. buzzatii for comparative purposes

From: Transcriptional responses are oriented towards different components of the rearing environment in two Drosophila sibling species

Assembly

D. koepferae (genotype F)

D. buzzatii (reference)

Total length (bp)

169,200,914

160,803,536

Total scaffolds

1,373

722

Scaffolds ≥ 5000 bp

772

588

Scaffolds ≥ 50,000 bp

347

256

Longest scaffold (bp)

5,773,295

16,306,990

N50 (bp)

807,095

1,380,942

L50

63

30

Total Ns (bp)

5,747,328

14,818,525

% GC

38.0

38.5

BUSCO Completeness (%)

98.0

97.0

BUSCO Fragmented (%)

1.3

1.7

BUSCO Missing (%)

0.2

0.4

Fully annotated genes

11,804

10,983