Table 1 Mapping statistics to the pig and the ASF virus reference genomes
Study group | High dose | Medium dose | Low dose | Control |
|---|---|---|---|---|
Number of biological replicates | 3 | 3 | 3 | 1 |
Total trimmed reads | 9,660,832 | 12,889,691 | 45,343,542 | 30,355,538 |
No of reads mapped to pig host | 5,763,796 | 3,493,725 | 42,818,622 | 27,560,673 |
No of genes mapped to pig host (% of coding genes mapped) | 14,544 (93.56%) | 13,755 (88.5%) | 15,543 (99.99%) | 15,527 (99.88%) |
No of reads mapped to ASFV pathogen | 14,302 | 13,363 | 12,381 | 0 |
No of genes mapped to ASFV pathogen (% of coding genes mapped) | 172 (98.86%) | 174 (99.43%) | 167 (95.43%) | 0 |