Skip to main content

Table 5 Differentially expressed genes involved in MHC antigen processing and presentation. TND = transcript not detected

From: Transcriptome profile of spleen tissues from locally-adapted Kenyan pigs (Sus scrofa) experimentally infected with three varying doses of a highly virulent African swine fever virus genotype IX isolate: Ken12/busia.1 (ken-1033)

Gene

Description

Differential expression in High dose

Differential expression in medium dose

Differential expression in Low dose

log2 Fold Change

padj

log2 Fold Change

padj

log2 Fold Change

Padj

SLA-DQB1

SLA-DQ beta1 domain

−1.36

4.51E-03

−1.64

9.01E-04

TND

TND

SLA-DQA

MHC class II histocompatibility antigen SLA-DQA

−1.85

8.57E-04

−1.19

3.97E-02

TND

TND

SLA-DRA

MHC class II DR-alpha

−1.62

5.34E-03

TND

TND

TND

TND

SLA-DRB1

MHC class II histocompatibility antigen SLA-DRB1

TND

TND

−1.20

4.72E-02

TND

TND

SLA-DOB

MHC class II, DO beta

TND

TND

−2.37

2.33E-03

TND

TND

SLA-DMB

MHC class II, DM beta

−1.67

1.84E-03

−1.27

2.28E-02

TND

TND

SEL1L3

SEL1L family member 3

1.59

4.11E-02

TND

TND

TND

TND

SEL1L

SEL1L adaptor subunit of ERAD E3 ubiquitin ligase

−2.13

1.43E-05

−1.47

5.07E-03

TND

TND

PSME4

Proteasome activator subunit 4

−0.96

7.83E-03

TND

TND

TND

TND

PSMD4

Proteasome 26S subunit, non-ATPase 4

TND

TND

1.29

3.23E-03

TND

TND

PSMD3

Proteasome 26S subunit, non-ATPase 3

1.32

4.70E-03

TND

TND

TND

TND

PSMC5

Proteasome 26S subunit, ATPase 5

TND

TND

0.89

2.78E-02

TND

TND

PSMC3

Proteasome 26S subunit, ATPase 3

TND

TND

1.16

3.35E-02

TND

TND

PSMC1

Proteasome 26S subunit, ATPase 1

TND

TND

1.10

2.25E-02

TND

TND

PMSF1

Proteasome inhibitor subunit 1

0.98

3.08E-02

1.10

1.61E-02

TND

TND

CTSS

Cathepsin S

−2.10

5.96E-06

−1.88

2.60E-04

TND

TND

ADRM1

ADRM1 26S proteasome ubiquitin receptor

1.20

1.60E-02

TND

TND

TND

TND