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Table 6 Differentially expressed genes associated with autophagy. TND = transcript not detected

From: Transcriptome profile of spleen tissues from locally-adapted Kenyan pigs (Sus scrofa) experimentally infected with three varying doses of a highly virulent African swine fever virus genotype IX isolate: Ken12/busia.1 (ken-1033)

 

Gene

Description

Differential expression in High dose

Differential expression in medium dose

Differential expression in Low dose

log2 Fold Change

padj

log2 Fold Change

padj

log2 Fold Change

Padj

Autophagy-related Genes

ATG4C

Autophagy related 4C cysteine peptidase

−1.39

1.64E-02

TND

TND

TND

TND

ATG4D

Autophagy related 4D cysteine peptidase

1.10

4.64E-02

TND

TND

TND

TND

BNIP3

BCL2 interacting protein 3

3.09

2.93E-09

2.53

1.72E-05

TND

TND

DCT

Dopachrome tautomerase

TND

TND

−1.94

4.41E-02

TND

TND

DRAM2

DNA damage regulated autophagy modulator 2

−2.39

9.44E-06

−1.58

5.40E-03

TND

TND

EPG5

Ectopic P-granules autophagy protein 5 homolog

TND

TND

−1.38

2.98E-02

TND

TND

FXR2

FMR1 autosomal homolog 2

TND

TND

1.01

1.50E-02

TND

TND

NBR1

NBR1 autophagy cargo receptor

−1.25

1.41E-03

TND

TND

TND

TND

SOGA1

Suppressor of glucose, autophagy associated 1

1.41

1.47E-03

TND

TND

TND

TND

SSNA1

SS nuclear autoantigen 1

1.23

2.04E-02

1.13

3.81E-02

TND

TND

FUNDC1

FUN14 domain containing 1

TND

TND

TND

TND

−0.96

3.69E-02

Autophagy and cell death regulating genes

GAS2L2

Growth arrest-specific 2 like 2

4.93

1.26E-06

TND

TND

TND

TND

GAS2L1

Growth arrest specific 2 like 1

1.31

4.10E-02

1.39

2.98E-02

TND

TND

GAS2L3

Growth arrest specific 2 like 3

TND

TND

−2.32

2.45E-02

TND

TND

GAS7

Growth arrest specific 7

1.86

5.02E-05

TND

TND

TND

TND

GAS8

Growth arrest specific 8

3.74

2.60E-15

1.52

4.38E-03

TND

TND

MAD1L1

Mitotic arrest deficient 1 like 1

3.30

2.53E-08

TND

TND

TND

TND

MAD1L2

Mitotic arrest deficient 1 like 2

1.64

9.99E-03

TND

TND

TND

TND

GADD45G

Growth arrest and DNA damage inducible gamma

2.25

1.39E-02

2.11

3.35E-02

TND

TND

GADD45B

Growth arrest and DNA damage inducible beta

1.73

1.33E-02

2.00

8.46E-03

TND

TND

FAIM2

Fas apoptotic inhibitory molecule 2

TND

TND

3.96

2.87E-03

TND

TND

NUPR1

Nuclear protein 1, transcriptional regulator

5.13

8.83E-14

5.73

6.21E-15

TND

TND

APAF1

Apoptotic peptidase activating factor 1

−1.49

6.29E-03

TND

TND

TND

TND