Table 6 Validation/testing of the RVFV Typing tool to classify whole genome sequences (n = 234) using partial glycoprotein representative sequences. The classification results were compared to manual phylogenetic analysis. Abbreviations as used in this table: TP True Positives, TN True Negatives, FP False Positives, FN False Negatives, TPR True Positive Rate, FPR False Positive Rate, ACC Accuracy
From: Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment
Lineage | Known | TP | TN | FP | FN | TPR | FPR | ACC |
|---|---|---|---|---|---|---|---|---|
A | 10 | 10 | 224 | 0 | 0 | 100.0 | 0.0 | 100.0 |
B | 1 | 1 | 233 | 0 | 0 | 100.0 | 0.0 | 100.0 |
C | 88 | 88 | 146 | 0 | 0 | 100.0 | 0.0 | 100.0 |
D | 1 | 1 | 233 | 0 | 0 | 100.0 | 0.0 | 100.0 |
E | 3 | 3 | 231 | 0 | 0 | 100.0 | 0.0 | 100.0 |
F | 2 | 2 | 232 | 0 | 0 | 100.0 | 0.0 | 100.0 |
G | 2 | 2 | 232 | 0 | 0 | 100.0 | 0.0 | 100.0 |
H | 105 | 105 | 129 | 0 | 0 | 100.0 | 0.0 | 100.0 |
I | 2 | 2 | 232 | 0 | 0 | 100.0 | 0.0 | 100.0 |
J | 1 | 1 | 233 | 0 | 0 | 100.0 | 0.0 | 100.0 |
K | 4 | 4 | 230 | 0 | 0 | 100.0 | 0.0 | 100.0 |
L | 8 | 8 | 226 | 0 | 0 | 100.0 | 0.0 | 100.0 |
M | 1 | 1 | 233 | 0 | 0 | 100.0 | 0.0 | 100.0 |
N | 5 | 5 | 229 | 0 | 0 | 100.0 | 0.0 | 100.0 |
O | 1 | 1 | 233 | 0 | 0 | 100.0 | 0.0 | 100.0 |