Table 7 RVFV Typing tool lineage assignment analysis. Tabular results of the phylogenetic lineage assignment analysis of query sequences. The following terminologies are used: Query, sequence identifier/header in the FASTA file; Lineage, assigned/identified lineage of the query sequence; Bootstrap, ultrafast bootstrap approximation support value; Length, length of the nucleotide sequence; Year_first; Year when the lineage was first reported; Year_last: Year when the lineage was last reported, Countries: Countries where the identified lineage have also been reported
From: Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment
Query | Lineage | Bootstrap | Length | Year_first | Year_last | Countries |
|---|---|---|---|---|---|---|
DVS-372 | C | 98 | 3885 | 1976 | 2016 | South Africa; Mauritania; Zimbabwe; Uganda; Somalia; Angola; Madagascar; Sudan; Saudi Arabia; Kenya |
DVS-333 | C | 97 | 3885 | 1976 | 2016 | South Africa; Mauritania; Zimbabwe; Uganda; Somalia; Angola; Madagascar; Sudan; Saudi Arabia; Kenya |
DVS-356 | C | 91 | 3885 | 1976 | 2016 | South Africa; Mauritania; Zimbabwe; Uganda; Somalia; Angola; Madagascar; Sudan; Saudi Arabia; Kenya |
DVS-321 | C | 93 | 3885 | 1976 | 2016 | South Africa; Mauritania; Zimbabwe; Uganda; Somalia; Angola; Madagascar; Sudan; Saudi Arabia; Kenya |
DVS-230 | C | 96 | 3885 | 1976 | 2016 | South Africa; Mauritania; Zimbabwe; Uganda; Somalia; Angola; Madagascar; Sudan; Saudi Arabia; Kenya |