Assessment of DNA methylation in porcine immune cells reveals novel regulatory elements associated with cell-specific gene expression and immune capacity traits

Table 1 Summary of Immune Cell WGBS Libraries and Global DNA Methylation

Cell Type	Symbol	Avg. Raw Reads (M)	Mapping Rate (%)	Avg. Clean Reads (M)	Conversion Efficiency (%)	Avg. Global Methylation Rate (%)*	Replicate Correlation
CD4⁺ T	CD4T	174.1	88.3	131.6	99.4	84.3^a	0.84
SWC6γδ⁺ T	SWC6gdT	168.1	88.6	128.4	99.4	84.1^a	0.81
Myeloid	Myeloid	146.0	88.8	111.6	99.4	83.5^a	0.81
CD8⁺ T	CD8T	183.8	88.6	140.0	99.4	83.1^a	0.81
Neutrophil	Neut	162.6	90.5	122.9	99.4	82.3^ab	0.80
CD21⁻ B	CD21nB	152.4	88.5	115.6	99.4	82.2^abc	0.80
CD21⁺ B	CD21pB	150.6	90.3	113.3	99.4	80.3^bc	0.83
NK	NK	172.8	88.9	133.0	99.4	80.3^bc	0.80
CD4⁺CD8⁺T	CD4CD8T	170.1	91.0	127.9	99.4	80.1^c	0.83

ISSN: 1471-2164