Table 4 SNPs within cLMRs associated with transcript abundance
SNP ID | SNP Pos | Trait | cLMR Cell | Gene | Meth-TPM cor | Meth-TPM pvalue | Expression Enrichment |
|---|---|---|---|---|---|---|---|
rs81368734 (T/C) | 3:30,799,911 | CD8 + T%, CD8-T% | CD4T, SWC6gdT | SNX29 | 0.673 | 0.003 | CD21pB |
rs81370925 (T/C) | 3:56,530,168 | CD8 + T%, CD8-T%, CD3-CD8-T% | CD21nB, SWC6gdT | ZAP70 | -0.752 | 0.0005 | CD21nB, CD8T, SWC6gdT, Neut |
rs81371115 (C/T) | 3:57,971,274 | CD8T | CD8B | -0.839 | 2.56E-05 | CD8T, NK | |
rs81371265 (G/A) | 3:58,968,002 | NK | ATOH8 | -0.715 | 0.0012 | CD8T, NK | |
rs81399335 (G/A) | 8:30,368,512 | Lymphocyte percentage, 20 d | CD21pB, Myeloid | KLHL5 | -0.446 | 0.073 | Myeloid |
rs327164077 (T/C) | 4:8,034,723 | Number of mummified pigs | Myeloid, NK | NDRG1 | -0.614 | 0.0087 | Myeloid |